Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ST20-AS1-201ENST00000560255 4223 ntBASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 METTL21AP1-201ENST00000438852 635 ntBASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 VDAC1P7-201ENST00000462417 847 ntBASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 AL049840.4-201ENST00000602422 811 ntBASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 AC004890.2-204ENST00000481968 304 ntBASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 AC026410.3-201ENST00000514280 936 ntBASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 AC036164.1-201ENST00000570544 333 ntBASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 AL662799.1-202ENST00000614205 422 ntBASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 AC023511.2-201ENST00000618803 211 ntBASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 AC022144.1-201ENST00000602255 1580 ntBASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 KRT18P28-201ENST00000453838 1332 ntBASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
ATG4AQ8WYN0 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 AC023310.3-201ENST00000557027 670 ntBASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 AC100756.1-201ENST00000562736 682 ntBASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 AC138749.3-201ENST00000567691 622 ntBASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 AC116165.1-201ENST00000611806 668 ntBASIC15.65■□□□□ 0.1
ATG4AQ8WYN0 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms