Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 SPCS2P1-201ENST00000561636 679 ntBASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 AL158211.3-201ENST00000607385 239 ntBASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 MTHFR-210ENST00000641407 2387 ntBASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 HAL-202ENST00000538703 2637 ntTSL 2 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 PID1-202ENST00000392054 2745 ntTSL 2 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 CICP8-201ENST00000455800 2813 ntBASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 FAM220BP-201ENST00000377689 816 ntBASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 AC136604.1-201ENST00000418535 575 ntBASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 AC012497.1-201ENST00000429392 575 ntBASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 AC026979.3-201ENST00000607315 403 ntBASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
DEPDC4Q8N2C3 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 TREML5P-201ENST00000421694 576 ntBASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms