Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 HNRNPA1P48-202ENST00000565308 961 ntBASIC14.06□□□□□ -0.16
BEST3Q8N1M1 RN7SL48P-201ENST00000579283 293 ntBASIC14.06□□□□□ -0.16
BEST3Q8N1M1 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.06□□□□□ -0.16
BEST3Q8N1M1 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.06□□□□□ -0.16
BEST3Q8N1M1 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 DERL2-202ENST00000570848 657 ntTSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 AC006453.4-201ENST00000636949 1252 ntBASIC14.05□□□□□ -0.16
BEST3Q8N1M1 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 AL354989.2-201ENST00000435838 1540 ntBASIC14.05□□□□□ -0.16
BEST3Q8N1M1 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
BEST3Q8N1M1 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 AC108725.1-201ENST00000495472 409 ntBASIC14.04□□□□□ -0.16
BEST3Q8N1M1 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 FAM8A2P-201ENST00000528813 1142 ntBASIC14.04□□□□□ -0.16
BEST3Q8N1M1 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 MIR4741-201ENST00000579822 90 ntBASIC14.04□□□□□ -0.16
BEST3Q8N1M1 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC14.04□□□□□ -0.16
BEST3Q8N1M1 MIR6869-201ENST00000619434 62 ntBASIC14.04□□□□□ -0.16
BEST3Q8N1M1 ENPP7P14-201ENST00000621765 1040 ntBASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms