Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 AC093909.3-201ENST00000504783 336 ntBASIC20.04■□□□□ 0.8
NPHP3Q7Z494 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 AC007952.4-201ENST00000573866 637 ntBASIC20.04■□□□□ 0.8
NPHP3Q7Z494 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
NPHP3Q7Z494 AC013726.1-201ENST00000563747 2285 ntBASIC20.03■□□□□ 0.8
NPHP3Q7Z494 KRT17P5-201ENST00000332088 839 ntBASIC20.03■□□□□ 0.8
NPHP3Q7Z494 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 EIF5AP2-201ENST00000585668 1047 ntBASIC20.03■□□□□ 0.8
NPHP3Q7Z494 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 NAMA-206ENST00000605377 509 ntTSL 5 BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 AC011471.3-201ENST00000623576 402 ntBASIC20.03■□□□□ 0.8
NPHP3Q7Z494 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP3Q7Z494 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 AQP7P5-201ENST00000428759 1049 ntBASIC20.02■□□□□ 0.8
NPHP3Q7Z494 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 AQP7P4-201ENST00000447083 1042 ntBASIC20.02■□□□□ 0.8
NPHP3Q7Z494 AQP7P2-201ENST00000453967 1041 ntBASIC20.02■□□□□ 0.8
NPHP3Q7Z494 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 FAM86KP-201ENST00000509817 987 ntBASIC20.02■□□□□ 0.8
NPHP3Q7Z494 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 HERC2P11-201ENST00000562845 725 ntBASIC20.02■□□□□ 0.8
NPHP3Q7Z494 AC100756.2-201ENST00000569537 736 ntBASIC20.02■□□□□ 0.8
NPHP3Q7Z494 MIR2392-201ENST00000584881 84 ntBASIC20.02■□□□□ 0.8
NPHP3Q7Z494 AC140113.1-201ENST00000603467 169 ntBASIC20.02■□□□□ 0.8
NPHP3Q7Z494 AQP7P3-201ENST00000624547 1041 ntBASIC20.02■□□□□ 0.8
NPHP3Q7Z494 CASP16P-204ENST00000635032 809 ntBASIC20.02■□□□□ 0.8
NPHP3Q7Z494 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms