Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 AL022334.2-201ENST00000610000 484 ntBASIC12.2□□□□□ -0.46
VPS13CQ709C8 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 MIR6720-201ENST00000611664 98 ntBASIC12.2□□□□□ -0.46
VPS13CQ709C8 FTX-216ENST00000638985 1367 ntTSL 5 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 RN7SKP109-201ENST00000410592 316 ntBASIC12.2□□□□□ -0.46
VPS13CQ709C8 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 CSNK1G2P1-201ENST00000442675 955 ntBASIC12.2□□□□□ -0.46
VPS13CQ709C8 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 AC100827.2-201ENST00000563214 1194 ntBASIC12.2□□□□□ -0.46
VPS13CQ709C8 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 AL672207.1-201ENST00000328462 1570 ntBASIC12.19□□□□□ -0.46
VPS13CQ709C8 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 BX088702.1-201ENST00000610784 235 ntBASIC12.19□□□□□ -0.46
VPS13CQ709C8 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 AC027601.3-201ENST00000622907 509 ntBASIC12.19□□□□□ -0.46
VPS13CQ709C8 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 AC131206.1-201ENST00000538078 1211 ntBASIC12.19□□□□□ -0.46
VPS13CQ709C8 AC087392.5-201ENST00000612517 489 ntBASIC12.19□□□□□ -0.46
VPS13CQ709C8 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
VPS13CQ709C8 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13CQ709C8 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC12.18□□□□□ -0.46
VPS13CQ709C8 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms