Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC099328.1-201ENST00000498809 1030 ntBASIC10.47□□□□□ -0.73
PRKDCP78527 HINT1-205ENST00000508488 703 ntTSL 2 BASIC10.47□□□□□ -0.73
PRKDCP78527 GCOM2-201ENST00000509133 1104 ntBASIC10.47□□□□□ -0.73
PRKDCP78527 KLF17P1-201ENST00000547105 1126 ntBASIC10.47□□□□□ -0.73
PRKDCP78527 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC10.47□□□□□ -0.73
PRKDCP78527 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC10.47□□□□□ -0.73
PRKDCP78527 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC10.47□□□□□ -0.73
PRKDCP78527 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
PRKDCP78527 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
PRKDCP78527 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC10.47□□□□□ -0.73
PRKDCP78527 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC10.47□□□□□ -0.73
PRKDCP78527 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
PRKDCP78527 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
PRKDCP78527 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC10.46□□□□□ -0.73
PRKDCP78527 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
PRKDCP78527 SHMT1P1-201ENST00000419974 1312 ntBASIC10.46□□□□□ -0.73
PRKDCP78527 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC10.46□□□□□ -0.73
PRKDCP78527 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC10.46□□□□□ -0.73
PRKDCP78527 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.73
PRKDCP78527 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 FAM226B-201ENST00000602508 1490 ntBASIC10.46□□□□□ -0.73
PRKDCP78527 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC10.46□□□□□ -0.73
PRKDCP78527 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 SAP18P2-201ENST00000434334 459 ntBASIC10.46□□□□□ -0.73
PRKDCP78527 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC10.46□□□□□ -0.73
PRKDCP78527 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC10.46□□□□□ -0.73
PRKDCP78527 AC091769.1-201ENST00000619576 568 ntBASIC10.46□□□□□ -0.73
PRKDCP78527 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC10.46□□□□□ -0.73
PRKDCP78527 ESR1-214ENST00000638569 132 ntTSL 5 BASIC10.46□□□□□ -0.73
PRKDCP78527 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC10.46□□□□□ -0.73
PRKDCP78527 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC10.46□□□□□ -0.73
PRKDCP78527 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC10.46□□□□□ -0.73
PRKDCP78527 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC10.46□□□□□ -0.73
PRKDCP78527 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
PRKDCP78527 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
PRKDCP78527 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.74
PRKDCP78527 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
PRKDCP78527 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC10.46□□□□□ -0.74
PRKDCP78527 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC10.46□□□□□ -0.74
PRKDCP78527 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC10.46□□□□□ -0.74
PRKDCP78527 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC10.46□□□□□ -0.74
PRKDCP78527 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
PRKDCP78527 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC10.46□□□□□ -0.74
PRKDCP78527 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
PRKDCP78527 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC10.46□□□□□ -0.74
PRKDCP78527 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC10.46□□□□□ -0.74
PRKDCP78527 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC10.46□□□□□ -0.74
PRKDCP78527 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC10.46□□□□□ -0.74
PRKDCP78527 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
PRKDCP78527 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.74
PRKDCP78527 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.74
PRKDCP78527 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
PRKDCP78527 MIR648-201ENST00000385046 94 ntBASIC10.46□□□□□ -0.74
PRKDCP78527 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC10.46□□□□□ -0.74
PRKDCP78527 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
PRKDCP78527 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC10.46□□□□□ -0.74
PRKDCP78527 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC10.46□□□□□ -0.74
PRKDCP78527 RN7SL33P-201ENST00000462543 342 ntBASIC10.46□□□□□ -0.74
PRKDCP78527 MBP-230ENST00000528160 584 ntTSL 5 BASIC10.46□□□□□ -0.74
PRKDCP78527 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC10.46□□□□□ -0.74
PRKDCP78527 RN7SL478P-201ENST00000584358 298 ntBASIC10.46□□□□□ -0.74
PRKDCP78527 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC10.46□□□□□ -0.74
PRKDCP78527 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC10.46□□□□□ -0.74
PRKDCP78527 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC10.45□□□□□ -0.74
PRKDCP78527 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC10.45□□□□□ -0.74
PRKDCP78527 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC10.45□□□□□ -0.74
PRKDCP78527 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC10.45□□□□□ -0.74
PRKDCP78527 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC10.45□□□□□ -0.74
PRKDCP78527 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC10.45□□□□□ -0.74
PRKDCP78527 RN7SL556P-201ENST00000582856 298 ntBASIC10.45□□□□□ -0.74
PRKDCP78527 AC026336.4-201ENST00000624565 1050 ntBASIC10.45□□□□□ -0.74
PRKDCP78527 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
PRKDCP78527 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC10.45□□□□□ -0.74
PRKDCP78527 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
PRKDCP78527 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC10.45□□□□□ -0.74
PRKDCP78527 AC003688.2-201ENST00000576271 415 ntTSL 3 BASIC10.45□□□□□ -0.74
PRKDCP78527 AC018695.2-201ENST00000602789 498 ntTSL 5 BASIC10.45□□□□□ -0.74
PRKDCP78527 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC10.45□□□□□ -0.74
PRKDCP78527 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms