Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
FOXA1P55317 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.61□□□□□ -0.07
FOXA1P55317 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.61□□□□□ -0.07
FOXA1P55317 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 PKD1P5-201ENST00000532415 10291 ntBASIC14.61□□□□□ -0.07
FOXA1P55317 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 SPDYE19P-201ENST00000338590 713 ntBASIC14.61□□□□□ -0.07
FOXA1P55317 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 AL645937.2-201ENST00000396808 931 ntBASIC14.61□□□□□ -0.07
FOXA1P55317 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.61□□□□□ -0.07
FOXA1P55317 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.61□□□□□ -0.07
FOXA1P55317 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.61□□□□□ -0.07
FOXA1P55317 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.61□□□□□ -0.07
FOXA1P55317 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.61□□□□□ -0.07
FOXA1P55317 GNAQP1-201ENST00000444815 1067 ntBASIC14.61□□□□□ -0.07
FOXA1P55317 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.61□□□□□ -0.07
FOXA1P55317 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.61□□□□□ -0.07
FOXA1P55317 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
FOXA1P55317 MIR8072-201ENST00000614241 80 ntBASIC14.61□□□□□ -0.07
FOXA1P55317 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.61□□□□□ -0.07
FOXA1P55317 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.61□□□□□ -0.07
FOXA1P55317 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 AC092135.3-201ENST00000624151 1846 ntBASIC14.61□□□□□ -0.07
FOXA1P55317 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
FOXA1P55317 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 AGGF1P1-201ENST00000509500 2073 ntBASIC14.61□□□□□ -0.07
FOXA1P55317 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
FOXA1P55317 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.6□□□□□ -0.07
FOXA1P55317 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.6□□□□□ -0.07
FOXA1P55317 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
FOXA1P55317 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.6□□□□□ -0.07
FOXA1P55317 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.6□□□□□ -0.07
FOXA1P55317 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.6□□□□□ -0.07
FOXA1P55317 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
FOXA1P55317 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.6□□□□□ -0.07
FOXA1P55317 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
FOXA1P55317 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
FOXA1P55317 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.6□□□□□ -0.07
FOXA1P55317 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.6□□□□□ -0.07
FOXA1P55317 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.6□□□□□ -0.07
FOXA1P55317 BRI3BPP1-201ENST00000594224 787 ntBASIC14.6□□□□□ -0.07
FOXA1P55317 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
FOXA1P55317 AC139530.3-201ENST00000620344 690 ntBASIC14.6□□□□□ -0.07
FOXA1P55317 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.6□□□□□ -0.07
FOXA1P55317 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.6□□□□□ -0.07
FOXA1P55317 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
FOXA1P55317 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA1P55317 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms