Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 LOXL4-201ENST00000260702 3653 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 HLA-A-201ENST00000376802 1334 ntBASIC12.63□□□□□ -0.39
HOXA1P49639 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC12.63□□□□□ -0.39
HOXA1P49639 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HOXA1P49639 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 NPTN-IT1-201ENST00000628401 2283 ntBASIC12.63□□□□□ -0.39
HOXA1P49639 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HOXA1P49639 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC12.63□□□□□ -0.39
HOXA1P49639 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 FAM220BP-201ENST00000377689 816 ntBASIC12.63□□□□□ -0.39
HOXA1P49639 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 AC142381.1-201ENST00000426099 345 ntBASIC12.63□□□□□ -0.39
HOXA1P49639 AL671277.1-201ENST00000429656 993 ntBASIC12.63□□□□□ -0.39
HOXA1P49639 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC12.63□□□□□ -0.39
HOXA1P49639 FAM86C2P-203ENST00000528684 1004 ntBASIC12.63□□□□□ -0.39
HOXA1P49639 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC12.63□□□□□ -0.39
HOXA1P49639 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC12.63□□□□□ -0.39
HOXA1P49639 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC12.63□□□□□ -0.39
HOXA1P49639 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 ZNF259P1-201ENST00000407656 1365 ntBASIC12.63□□□□□ -0.39
HOXA1P49639 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
HOXA1P49639 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
HOXA1P49639 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HOXA1P49639 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
HOXA1P49639 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
HOXA1P49639 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA1P49639 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC12.63□□□□□ -0.39
HOXA1P49639 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXA1P49639 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA1P49639 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
HOXA1P49639 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA1P49639 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
HOXA1P49639 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC12.62□□□□□ -0.39
HOXA1P49639 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC12.62□□□□□ -0.39
HOXA1P49639 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
HOXA1P49639 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA1P49639 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA1P49639 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC12.62□□□□□ -0.39
HOXA1P49639 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA1P49639 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
HOXA1P49639 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
HOXA1P49639 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
HOXA1P49639 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA1P49639 MED15P5-201ENST00000423150 992 ntBASIC12.62□□□□□ -0.39
HOXA1P49639 HNRNPA1P28-201ENST00000424481 961 ntBASIC12.62□□□□□ -0.39
HOXA1P49639 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
HOXA1P49639 RPL13AP23-201ENST00000480739 586 ntBASIC12.62□□□□□ -0.39
HOXA1P49639 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC12.62□□□□□ -0.39
HOXA1P49639 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC12.62□□□□□ -0.39
HOXA1P49639 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC12.62□□□□□ -0.39
HOXA1P49639 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC12.62□□□□□ -0.39
HOXA1P49639 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms