Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 RN7SL578P-201ENST00000477781 283 ntBASIC19.18■□□□□ 0.66
RXRBP28702 GCOM2-201ENST00000509133 1104 ntBASIC19.18■□□□□ 0.66
RXRBP28702 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC19.18■□□□□ 0.66
RXRBP28702 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RXRBP28702 KRT8P2-201ENST00000556193 944 ntBASIC19.18■□□□□ 0.66
RXRBP28702 VPS18-202ENST00000558474 873 ntTSL 3 BASIC19.18■□□□□ 0.66
RXRBP28702 RN7SL440P-201ENST00000577855 343 ntBASIC19.18■□□□□ 0.66
RXRBP28702 COQ4-204ENST00000608951 781 ntTSL 2 BASIC19.18■□□□□ 0.66
RXRBP28702 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC19.18■□□□□ 0.66
RXRBP28702 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RXRBP28702 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.18■□□□□ 0.66
RXRBP28702 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.18■□□□□ 0.66
RXRBP28702 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RXRBP28702 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
RXRBP28702 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RXRBP28702 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RXRBP28702 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.18■□□□□ 0.66
RXRBP28702 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RXRBP28702 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.18■□□□□ 0.66
RXRBP28702 TNRC18P3-201ENST00000441896 2691 ntBASIC19.18■□□□□ 0.66
RXRBP28702 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RXRBP28702 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RXRBP28702 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
RXRBP28702 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RXRBP28702 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RXRBP28702 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RXRBP28702 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RXRBP28702 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 OR8T1P-201ENST00000421347 918 ntBASIC19.17■□□□□ 0.66
RXRBP28702 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC19.17■□□□□ 0.66
RXRBP28702 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 CDK4P1-201ENST00000454213 828 ntBASIC19.17■□□□□ 0.66
RXRBP28702 AC092910.2-201ENST00000491262 348 ntBASIC19.17■□□□□ 0.66
RXRBP28702 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC19.17■□□□□ 0.66
RXRBP28702 CD164-210ENST00000512821 964 ntTSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RXRBP28702 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC19.17■□□□□ 0.66
RXRBP28702 AC079414.2-201ENST00000567157 1104 ntBASIC19.17■□□□□ 0.66
RXRBP28702 RN7SL524P-201ENST00000581152 300 ntBASIC19.17■□□□□ 0.66
RXRBP28702 AC005274.1-201ENST00000623460 802 ntBASIC19.17■□□□□ 0.66
RXRBP28702 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC19.17■□□□□ 0.66
RXRBP28702 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC19.17■□□□□ 0.66
RXRBP28702 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RXRBP28702 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RXRBP28702 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC19.17■□□□□ 0.66
RXRBP28702 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
RXRBP28702 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RXRBP28702 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC19.16■□□□□ 0.66
RXRBP28702 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC19.16■□□□□ 0.66
RXRBP28702 AL050341.2-201ENST00000567508 1541 ntBASIC19.16■□□□□ 0.66
RXRBP28702 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RXRBP28702 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.16■□□□□ 0.66
RXRBP28702 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RXRBP28702 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC19.16■□□□□ 0.66
RXRBP28702 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RXRBP28702 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RXRBP28702 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RXRBP28702 HLA-DMA-202ENST00000395303 1007 ntBASIC19.16■□□□□ 0.66
RXRBP28702 HMGA1P2-201ENST00000430198 324 ntBASIC19.16■□□□□ 0.66
RXRBP28702 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC19.16■□□□□ 0.66
RXRBP28702 B9D1-206ENST00000461069 923 ntTSL 2 BASIC19.16■□□□□ 0.66
RXRBP28702 AC095040.1-201ENST00000513286 675 ntBASIC19.16■□□□□ 0.66
RXRBP28702 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC19.16■□□□□ 0.66
RXRBP28702 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RXRBP28702 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RXRBP28702 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC19.16■□□□□ 0.66
RXRBP28702 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RXRBP28702 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC19.16■□□□□ 0.66
RXRBP28702 SNORD3B-1-201ENST00000577988 758 ntBASIC19.16■□□□□ 0.66
RXRBP28702 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC19.16■□□□□ 0.66
RXRBP28702 AL591424.3-201ENST00000614278 872 ntBASIC19.16■□□□□ 0.66
RXRBP28702 AC079331.1-201ENST00000623200 1200 ntBASIC19.16■□□□□ 0.66
RXRBP28702 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC19.16■□□□□ 0.66
RXRBP28702 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC19.16■□□□□ 0.66
RXRBP28702 AL513523.2-202ENST00000427283 2040 ntBASIC19.16■□□□□ 0.66
RXRBP28702 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RXRBP28702 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.16■□□□□ 0.66
RXRBP28702 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC19.16■□□□□ 0.66
RXRBP28702 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RXRBP28702 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC19.16■□□□□ 0.66
RXRBP28702 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RXRBP28702 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RXRBP28702 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RXRBP28702 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RXRBP28702 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
RXRBP28702 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RXRBP28702 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RXRBP28702 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RXRBP28702 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.15■□□□□ 0.66
RXRBP28702 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms