Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.71■□□□□ 0.27
TPM1P09493 AC015922.1-201ENST00000421102 1152 ntBASIC16.71■□□□□ 0.27
TPM1P09493 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.71■□□□□ 0.27
TPM1P09493 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.71■□□□□ 0.27
TPM1P09493 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TPM1P09493 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.71■□□□□ 0.27
TPM1P09493 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 AC022145.2-201ENST00000598203 171 ntBASIC16.71■□□□□ 0.27
TPM1P09493 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TPM1P09493 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TPM1P09493 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TPM1P09493 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC16.71■□□□□ 0.27
TPM1P09493 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC16.71■□□□□ 0.27
TPM1P09493 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.71■□□□□ 0.27
TPM1P09493 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
TPM1P09493 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
TPM1P09493 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
TPM1P09493 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
TPM1P09493 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
TPM1P09493 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
TPM1P09493 AC015802.1-201ENST00000588104 1449 ntBASIC16.7■□□□□ 0.26
TPM1P09493 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.7■□□□□ 0.26
TPM1P09493 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
TPM1P09493 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TPM1P09493 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 LILRP1-201ENST00000444199 1370 ntBASIC16.7■□□□□ 0.26
TPM1P09493 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
TPM1P09493 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.7■□□□□ 0.26
TPM1P09493 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
TPM1P09493 MIR940-201ENST00000401276 94 ntBASIC16.7■□□□□ 0.26
TPM1P09493 RBPMS2P1-201ENST00000437762 623 ntBASIC16.7■□□□□ 0.26
TPM1P09493 CEND1P1-201ENST00000451006 455 ntBASIC16.7■□□□□ 0.26
TPM1P09493 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
TPM1P09493 AL079307.3-201ENST00000556114 283 ntBASIC16.7■□□□□ 0.26
TPM1P09493 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.7■□□□□ 0.26
TPM1P09493 AC105339.1-204ENST00000636249 355 ntBASIC16.7■□□□□ 0.26
TPM1P09493 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
TPM1P09493 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC16.7■□□□□ 0.26
TPM1P09493 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.7■□□□□ 0.26
TPM1P09493 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.7■□□□□ 0.26
TPM1P09493 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TPM1P09493 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.7■□□□□ 0.26
TPM1P09493 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC16.7■□□□□ 0.26
TPM1P09493 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC16.7■□□□□ 0.26
TPM1P09493 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.7■□□□□ 0.26
TPM1P09493 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.7■□□□□ 0.26
TPM1P09493 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
TPM1P09493 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
TPM1P09493 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM1P09493 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC16.69■□□□□ 0.26
TPM1P09493 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
TPM1P09493 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.69■□□□□ 0.26
TPM1P09493 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.69■□□□□ 0.26
TPM1P09493 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC16.69■□□□□ 0.26
TPM1P09493 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TPM1P09493 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.69■□□□□ 0.26
TPM1P09493 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TPM1P09493 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
TPM1P09493 AC074338.1-201ENST00000416825 156 ntBASIC16.69■□□□□ 0.26
TPM1P09493 AC004832.2-201ENST00000426397 482 ntBASIC16.69■□□□□ 0.26
TPM1P09493 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.69■□□□□ 0.26
TPM1P09493 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms