Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC17.98■□□□□ 0.47
COL4A1P02462 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC17.98■□□□□ 0.47
COL4A1P02462 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
COL4A1P02462 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.97■□□□□ 0.47
COL4A1P02462 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.97■□□□□ 0.47
COL4A1P02462 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
COL4A1P02462 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
COL4A1P02462 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC17.97■□□□□ 0.47
COL4A1P02462 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC17.97■□□□□ 0.47
COL4A1P02462 AL035414.1-201ENST00000451327 857 ntBASIC17.97■□□□□ 0.47
COL4A1P02462 AC008723.1-201ENST00000506922 207 ntBASIC17.97■□□□□ 0.47
COL4A1P02462 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC17.97■□□□□ 0.47
COL4A1P02462 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC17.97■□□□□ 0.47
COL4A1P02462 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
COL4A1P02462 AC093752.3-201ENST00000567343 901 ntBASIC17.97■□□□□ 0.47
COL4A1P02462 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
COL4A1P02462 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
COL4A1P02462 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.97■□□□□ 0.47
COL4A1P02462 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A1P02462 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.97■□□□□ 0.47
COL4A1P02462 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 BANF1P3-201ENST00000412556 261 ntBASIC17.96■□□□□ 0.47
COL4A1P02462 OR8T1P-201ENST00000421347 918 ntBASIC17.96■□□□□ 0.47
COL4A1P02462 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A1P02462 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A1P02462 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A1P02462 MIR6769A-201ENST00000617340 73 ntBASIC17.96■□□□□ 0.47
COL4A1P02462 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
COL4A1P02462 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A1P02462 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
COL4A1P02462 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.96■□□□□ 0.47
COL4A1P02462 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
COL4A1P02462 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
COL4A1P02462 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
COL4A1P02462 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 AL807761.2-201ENST00000422849 729 ntBASIC17.96■□□□□ 0.47
COL4A1P02462 DNAJB1P1-201ENST00000429417 1024 ntBASIC17.96■□□□□ 0.47
COL4A1P02462 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC17.96■□□□□ 0.47
COL4A1P02462 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC17.96■□□□□ 0.47
COL4A1P02462 AP002803.1-201ENST00000528836 498 ntBASIC17.96■□□□□ 0.47
COL4A1P02462 AC027237.1-201ENST00000560942 655 ntBASIC17.96■□□□□ 0.47
COL4A1P02462 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
COL4A1P02462 SIGLEC18P-201ENST00000602271 909 ntBASIC17.96■□□□□ 0.47
COL4A1P02462 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A1P02462 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL4A1P02462 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
COL4A1P02462 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL4A1P02462 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.95■□□□□ 0.46
COL4A1P02462 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A1P02462 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.95■□□□□ 0.46
COL4A1P02462 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A1P02462 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A1P02462 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A1P02462 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A1P02462 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A1P02462 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
COL4A1P02462 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A1P02462 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A1P02462 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A1P02462 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms