Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC12.22□□□□□ -0.45
HMGB3O15347 REXO1L6P-202ENST00000619970 1078 ntBASIC12.22□□□□□ -0.45
HMGB3O15347 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 MYH11-202ENST00000396324 6847 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.22□□□□□ -0.45
HMGB3O15347 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC12.22□□□□□ -0.45
HMGB3O15347 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC12.22□□□□□ -0.45
HMGB3O15347 PTPRG-203ENST00000474889 9021 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HMGB3O15347 GZF1-202ENST00000377051 4740 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 NARF-206ENST00000457415 1668 ntTSL 5 BASIC12.22□□□□□ -0.45
HMGB3O15347 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 IL21R-201ENST00000337929 4849 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HMGB3O15347 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC12.22□□□□□ -0.45
HMGB3O15347 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 ARPC5-202ENST00000359856 7209 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC12.22□□□□□ -0.45
HMGB3O15347 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 SRC-204ENST00000373578 4630 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HMGB3O15347 ETNK1-201ENST00000266517 7159 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 ZKSCAN1-206ENST00000620510 9192 ntTSL 5 BASIC12.22□□□□□ -0.45
HMGB3O15347 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 DYSF-206ENST00000409744 6564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC12.21□□□□□ -0.45
HMGB3O15347 VCPIP1-201ENST00000310421 9942 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC12.21□□□□□ -0.45
HMGB3O15347 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
HMGB3O15347 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 MEX3B-202ENST00000558133 4333 ntBASIC12.21□□□□□ -0.45
HMGB3O15347 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC12.21□□□□□ -0.45
HMGB3O15347 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
HMGB3O15347 AC092135.3-201ENST00000624151 1846 ntBASIC12.21□□□□□ -0.45
HMGB3O15347 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.45
HMGB3O15347 DLGAP1-212ENST00000515196 5314 ntTSL 2 BASIC12.21□□□□□ -0.45
HMGB3O15347 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
HMGB3O15347 TBC1D27-201ENST00000261651 4838 ntTSL 2 BASIC12.21□□□□□ -0.45
HMGB3O15347 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 MED22-202ENST00000371999 987 ntTSL 3 BASIC12.21□□□□□ -0.45
HMGB3O15347 AC092474.2-201ENST00000424288 719 ntBASIC12.21□□□□□ -0.45
HMGB3O15347 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC12.21□□□□□ -0.45
HMGB3O15347 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
HMGB3O15347 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC12.21□□□□□ -0.45
HMGB3O15347 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC12.21□□□□□ -0.45
HMGB3O15347 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HMGB3O15347 POLD4-207ENST00000531239 584 ntTSL 2 BASIC12.21□□□□□ -0.45
HMGB3O15347 RPS29-206ENST00000557111 488 ntTSL 2 BASIC12.21□□□□□ -0.45
HMGB3O15347 AC105339.3-201ENST00000560043 636 ntBASIC12.21□□□□□ -0.45
HMGB3O15347 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC12.21□□□□□ -0.45
HMGB3O15347 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC12.21□□□□□ -0.45
HMGB3O15347 AL121772.3-201ENST00000610840 674 ntBASIC12.21□□□□□ -0.45
HMGB3O15347 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC12.21□□□□□ -0.45
HMGB3O15347 AC008735.5-201ENST00000623544 497 ntBASIC12.21□□□□□ -0.45
HMGB3O15347 AL358472.4-201ENST00000633140 710 ntBASIC12.21□□□□□ -0.45
HMGB3O15347 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC12.21□□□□□ -0.45
HMGB3O15347 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
HMGB3O15347 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HMGB3O15347 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HMGB3O15347 ERVK13-1-205ENST00000568395 5578 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HMGB3O15347 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC12.21□□□□□ -0.46
HMGB3O15347 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HMGB3O15347 RNF144B-201ENST00000259939 5036 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HMGB3O15347 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.21□□□□□ -0.46
HMGB3O15347 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC12.21□□□□□ -0.46
HMGB3O15347 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
HMGB3O15347 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HMGB3O15347 ZNF398-201ENST00000426851 5268 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HMGB3O15347 MYO7A-201ENST00000409619 7106 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HMGB3O15347 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HMGB3O15347 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HMGB3O15347 AC008132.1-203ENST00000412938 5920 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HMGB3O15347 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC12.21□□□□□ -0.46
HMGB3O15347 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC12.21□□□□□ -0.46
HMGB3O15347 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC12.2□□□□□ -0.46
HMGB3O15347 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 AP000845.1-201ENST00000581677 2131 ntBASIC12.2□□□□□ -0.46
HMGB3O15347 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC12.2□□□□□ -0.46
HMGB3O15347 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC12.2□□□□□ -0.46
HMGB3O15347 AL136982.4-201ENST00000437689 1740 ntBASIC12.2□□□□□ -0.46
HMGB3O15347 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 138.3 ms