Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 TMEM261P1-201ENST00000604899 340 ntBASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 AC084782.3-201ENST00000612282 578 ntBASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 PRSS30P-206ENST00000641773 873 ntBASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 TSPY16P-201ENST00000449843 468 ntBASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 AC092552.1-201ENST00000547243 906 ntBASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 AC123567.1-201ENST00000548294 1261 ntBASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 AL022328.3-201ENST00000607943 679 ntBASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 MKKS-203ENST00000609375 882 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 AC097478.2-201ENST00000610572 514 ntBASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
VPS9D1Q9Y2B5 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 LINC02228-204ENST00000642115 2962 ntBASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS9D1Q9Y2B5 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms