Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.45□□□□□ -0.1
BRF2Q9HAW0 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.45□□□□□ -0.1
BRF2Q9HAW0 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 TLE1P1-201ENST00000422965 589 ntBASIC14.44□□□□□ -0.1
BRF2Q9HAW0 BCRP1-201ENST00000444246 691 ntBASIC14.44□□□□□ -0.1
BRF2Q9HAW0 ELK1P1-201ENST00000485699 580 ntBASIC14.44□□□□□ -0.1
BRF2Q9HAW0 KRT18P25-201ENST00000508931 1278 ntBASIC14.44□□□□□ -0.1
BRF2Q9HAW0 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 SPCS2P1-201ENST00000561636 679 ntBASIC14.44□□□□□ -0.1
BRF2Q9HAW0 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 LRRC59-203ENST00000576448 1531 ntBASIC14.44□□□□□ -0.1
BRF2Q9HAW0 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.44□□□□□ -0.1
BRF2Q9HAW0 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 AC015802.1-201ENST00000588104 1449 ntBASIC14.43□□□□□ -0.1
BRF2Q9HAW0 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 PIN1P1-201ENST00000412108 996 ntBASIC14.43□□□□□ -0.1
BRF2Q9HAW0 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 EIF3FP3-201ENST00000434851 1086 ntBASIC14.43□□□□□ -0.1
BRF2Q9HAW0 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 AC026434.2-201ENST00000506094 1078 ntBASIC14.43□□□□□ -0.1
BRF2Q9HAW0 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 RN7SL204P-201ENST00000582831 262 ntBASIC14.43□□□□□ -0.1
BRF2Q9HAW0 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 INTS4P1-203ENST00000641008 3683 ntBASIC14.43□□□□□ -0.1
BRF2Q9HAW0 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
BRF2Q9HAW0 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms