Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 BX640514.1-201ENST00000583223 1918 ntBASIC11.37□□□□□ -0.59
LINC00477Q96M19 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 AP000347.1-202ENST00000435868 847 ntBASIC11.37□□□□□ -0.59
LINC00477Q96M19 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 AL158211.3-201ENST00000607385 239 ntBASIC11.37□□□□□ -0.59
LINC00477Q96M19 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 TEX48-202ENST00000612244 662 ntTSL 3 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 AC018665.1-201ENST00000622927 1362 ntBASIC11.37□□□□□ -0.59
LINC00477Q96M19 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 AL359258.3-201ENST00000622910 2331 ntBASIC11.36□□□□□ -0.59
LINC00477Q96M19 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 WRB-204ENST00000398753 699 ntTSL 3 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 HNRNPA3P1-201ENST00000401429 1139 ntBASIC11.36□□□□□ -0.59
LINC00477Q96M19 MPV17-208ENST00000405076 603 ntTSL 5 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 NUS1P3-201ENST00000423502 862 ntBASIC11.36□□□□□ -0.59
LINC00477Q96M19 AC114501.2-201ENST00000439631 535 ntBASIC11.36□□□□□ -0.59
LINC00477Q96M19 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 HNRNPA3P5-201ENST00000455201 833 ntBASIC11.36□□□□□ -0.59
LINC00477Q96M19 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 DKFZP434A062-201ENST00000573103 5021 ntBASIC11.36□□□□□ -0.59
LINC00477Q96M19 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms