Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 AC244394.1-201ENST00000435000 1665 ntBASIC15.28■□□□□ 0.04
CHFRQ96EP1 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 AP000845.1-201ENST00000581677 2131 ntBASIC15.28■□□□□ 0.04
CHFRQ96EP1 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 EEF1DP6-201ENST00000449232 372 ntBASIC15.27■□□□□ 0.04
CHFRQ96EP1 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHFRQ96EP1 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.27■□□□□ 0.04
CHFRQ96EP1 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHFRQ96EP1 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.27■□□□□ 0.03
CHFRQ96EP1 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CHFRQ96EP1 MBLAC2-202ENST00000514906 1936 ntBASIC15.27■□□□□ 0.03
CHFRQ96EP1 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHFRQ96EP1 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHFRQ96EP1 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHFRQ96EP1 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.27■□□□□ 0.03
CHFRQ96EP1 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHFRQ96EP1 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CHFRQ96EP1 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CHFRQ96EP1 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHFRQ96EP1 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CHFRQ96EP1 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 AL157791.1-201ENST00000553667 1699 ntBASIC15.26■□□□□ 0.03
CHFRQ96EP1 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 PARP8-206ENST00000503665 572 ntTSL 4 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 AC009779.1-201ENST00000551138 283 ntBASIC15.26■□□□□ 0.03
CHFRQ96EP1 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.26■□□□□ 0.03
CHFRQ96EP1 AL132994.2-201ENST00000603120 687 ntBASIC15.26■□□□□ 0.03
CHFRQ96EP1 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC15.26■□□□□ 0.03
CHFRQ96EP1 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CHFRQ96EP1 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms