Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 REXO1L2P-201ENST00000425429 2069 ntBASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 STK16-203ENST00000409516 895 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 DUX4L50-201ENST00000455245 715 ntBASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 FAM86KP-201ENST00000509817 987 ntBASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 MIR4472-1-201ENST00000584349 80 ntBASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 CASP16P-204ENST00000635032 809 ntBASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 ZBED1P1-201ENST00000502364 1930 ntBASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 AC013726.1-201ENST00000563747 2285 ntBASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 MARK2P16-201ENST00000605714 1723 ntBASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 LINC01815-202ENST00000641468 1409 ntBASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM43Q96BQ3 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 AL603832.2-201ENST00000566195 2125 ntBASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 AQP7P5-201ENST00000428759 1049 ntBASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 GCSHP3-201ENST00000431120 391 ntBASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 AQP7P4-201ENST00000447083 1042 ntBASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 AQP7P2-201ENST00000453967 1041 ntBASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 RHEB-207ENST00000496004 744 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 GCOM2-201ENST00000509133 1104 ntBASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 DGAT2L7P-201ENST00000602462 744 ntBASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 AQP7P3-201ENST00000624547 1041 ntBASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 AL451007.2-201ENST00000632004 563 ntBASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 SALL4P5-201ENST00000419001 1760 ntBASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM43Q96BQ3 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms