Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 RPL5P21-201ENST00000404620 815 ntBASIC13.47□□□□□ -0.25
RFT1Q96AA3 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 MTND6P24-201ENST00000440466 518 ntBASIC13.47□□□□□ -0.25
RFT1Q96AA3 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 BANF1P1-201ENST00000553684 263 ntBASIC13.47□□□□□ -0.25
RFT1Q96AA3 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 MIR4469-201ENST00000583919 79 ntBASIC13.47□□□□□ -0.25
RFT1Q96AA3 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 AL671883.3-201ENST00000603274 991 ntBASIC13.47□□□□□ -0.25
RFT1Q96AA3 AC084121.4-201ENST00000641598 221 ntBASIC13.47□□□□□ -0.25
RFT1Q96AA3 AF228730.8-201ENST00000642140 221 ntBASIC13.47□□□□□ -0.25
RFT1Q96AA3 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 CICP11-201ENST00000434745 2827 ntBASIC13.47□□□□□ -0.25
RFT1Q96AA3 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 AC018529.2-202ENST00000611482 3087 ntBASIC13.47□□□□□ -0.25
RFT1Q96AA3 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 AC015802.1-201ENST00000588104 1449 ntBASIC13.47□□□□□ -0.25
RFT1Q96AA3 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
RFT1Q96AA3 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RFT1Q96AA3 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 COL6A4P2-202ENST00000504443 2753 ntBASIC13.46□□□□□ -0.25
RFT1Q96AA3 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 RBM39-205ENST00000397370 612 ntTSL 2 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 AC004461.1-201ENST00000412461 403 ntBASIC13.46□□□□□ -0.25
RFT1Q96AA3 RBPMS2P1-201ENST00000437762 623 ntBASIC13.46□□□□□ -0.25
RFT1Q96AA3 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 AC011467.4-201ENST00000594891 528 ntBASIC13.46□□□□□ -0.25
RFT1Q96AA3 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC13.46□□□□□ -0.25
RFT1Q96AA3 AC018529.1-201ENST00000613063 361 ntBASIC13.46□□□□□ -0.25
RFT1Q96AA3 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RFT1Q96AA3 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RFT1Q96AA3 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.46□□□□□ -0.26
RFT1Q96AA3 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.46□□□□□ -0.26
RFT1Q96AA3 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.46□□□□□ -0.26
RFT1Q96AA3 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RFT1Q96AA3 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RFT1Q96AA3 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
RFT1Q96AA3 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.46□□□□□ -0.26
RFT1Q96AA3 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.46□□□□□ -0.26
RFT1Q96AA3 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RFT1Q96AA3 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RFT1Q96AA3 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
RFT1Q96AA3 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms