Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 AC021723.1-201ENST00000486306 515 ntBASIC23.2■■□□□ 1.3
VPS8Q8N3P4 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 SYT17-208ENST00000568433 812 ntTSL 3 BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
VPS8Q8N3P4 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 HNRNPA1P27-201ENST00000412087 955 ntBASIC23.19■■□□□ 1.3
VPS8Q8N3P4 AC022447.6-201ENST00000515522 438 ntBASIC23.19■■□□□ 1.3
VPS8Q8N3P4 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 ACTG1P17-201ENST00000558391 1119 ntBASIC23.19■■□□□ 1.3
VPS8Q8N3P4 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
VPS8Q8N3P4 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 AC078875.1-201ENST00000431907 724 ntBASIC23.18■■□□□ 1.3
VPS8Q8N3P4 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 IGHVIII-5-2-201ENST00000522505 261 ntBASIC23.18■■□□□ 1.3
VPS8Q8N3P4 FADS2-212ENST00000522639 360 ntTSL 5 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 AC027237.1-201ENST00000560942 655 ntBASIC23.18■■□□□ 1.3
VPS8Q8N3P4 FADS2-215ENST00000574708 385 ntTSL 3 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 AL132994.2-201ENST00000603120 687 ntBASIC23.18■■□□□ 1.3
VPS8Q8N3P4 AC026740.1-201ENST00000607068 791 ntBASIC23.18■■□□□ 1.3
VPS8Q8N3P4 AC004923.1-202ENST00000642106 209 ntBASIC23.18■■□□□ 1.3
VPS8Q8N3P4 AL133338.1-201ENST00000565695 1517 ntBASIC23.18■■□□□ 1.3
VPS8Q8N3P4 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
VPS8Q8N3P4 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
VPS8Q8N3P4 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VPS8Q8N3P4 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
VPS8Q8N3P4 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC23.17■■□□□ 1.3
VPS8Q8N3P4 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC23.17■■□□□ 1.3
VPS8Q8N3P4 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
VPS8Q8N3P4 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
VPS8Q8N3P4 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC23.17■■□□□ 1.3
VPS8Q8N3P4 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms