Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 AC024909.3-201ENST00000611513 2257 ntBASIC20.08■□□□□ 0.81
NPHP3Q7Z494 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 STK16-203ENST00000409516 895 ntTSL 2 BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 HNRNPA1P27-201ENST00000412087 955 ntBASIC20.08■□□□□ 0.81
NPHP3Q7Z494 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 RNA5SP417-201ENST00000516459 108 ntBASIC20.08■□□□□ 0.81
NPHP3Q7Z494 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 AC002472.4-201ENST00000641915 272 ntBASIC20.08■□□□□ 0.81
NPHP3Q7Z494 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 AC023090.2-201ENST00000625182 2110 ntBASIC20.08■□□□□ 0.81
NPHP3Q7Z494 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP3Q7Z494 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP3Q7Z494 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP3Q7Z494 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP3Q7Z494 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP3Q7Z494 BLK-205ENST00000529894 2017 ntTSL 5 BASIC20.08■□□□□ 0.8
NPHP3Q7Z494 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP3Q7Z494 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
NPHP3Q7Z494 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.8
NPHP3Q7Z494 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP3Q7Z494 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP3Q7Z494 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP3Q7Z494 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 RN7SL530P-201ENST00000485097 298 ntBASIC20.07■□□□□ 0.8
NPHP3Q7Z494 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC20.07■□□□□ 0.8
NPHP3Q7Z494 AL451007.2-201ENST00000632004 563 ntBASIC20.07■□□□□ 0.8
NPHP3Q7Z494 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 AC007292.2-201ENST00000593524 1812 ntBASIC20.07■□□□□ 0.8
NPHP3Q7Z494 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP3Q7Z494 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 DDX39AP1-201ENST00000445147 1181 ntBASIC20.06■□□□□ 0.8
NPHP3Q7Z494 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 MVK-217ENST00000639206 367 ntTSL 5 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 AC105250.1-201ENST00000509378 2057 ntBASIC20.06■□□□□ 0.8
NPHP3Q7Z494 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP3Q7Z494 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP3Q7Z494 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms