Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 RN7SL530P-201ENST00000485097 298 ntBASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC20.02■□□□□ 0.8
KRT28Q7Z3Y7 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
KRT28Q7Z3Y7 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
KRT28Q7Z3Y7 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
KRT28Q7Z3Y7 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 AC092850.2-201ENST00000623821 2697 ntBASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 KRT17P5-201ENST00000332088 839 ntBASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 BCAS2P2-201ENST00000425064 674 ntBASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 AC024293.1-201ENST00000467930 498 ntBASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 AC244250.3-201ENST00000620749 366 ntBASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT28Q7Z3Y7 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 USP4-203ENST00000415188 1454 ntTSL 3 BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 PSMD4P1-201ENST00000433951 1109 ntBASIC20■□□□□ 0.79
KRT28Q7Z3Y7 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 AGPAT5P1-201ENST00000455855 1019 ntBASIC20■□□□□ 0.79
KRT28Q7Z3Y7 RNA5SP417-201ENST00000516459 108 ntBASIC20■□□□□ 0.79
KRT28Q7Z3Y7 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 DKFZP434H168-201ENST00000567381 1905 ntBASIC20■□□□□ 0.79
KRT28Q7Z3Y7 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC20■□□□□ 0.79
KRT28Q7Z3Y7 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT28Q7Z3Y7 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT28Q7Z3Y7 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT28Q7Z3Y7 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT28Q7Z3Y7 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.99■□□□□ 0.79
KRT28Q7Z3Y7 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
KRT28Q7Z3Y7 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
KRT28Q7Z3Y7 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT28Q7Z3Y7 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT28Q7Z3Y7 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms