Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGCS1Q01581 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGCS1Q01581 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGCS1Q01581 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGCS1Q01581 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGCS1Q01581 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGCS1Q01581 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGCS1Q01581 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 HMGN1P19-201ENST00000436976 333 ntBASIC14.6□□□□□ -0.07
HMGCS1Q01581 INGX-202ENST00000489074 768 ntBASIC14.6□□□□□ -0.07
HMGCS1Q01581 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 AC023090.2-201ENST00000625182 2110 ntBASIC14.6□□□□□ -0.07
HMGCS1Q01581 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGCS1Q01581 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.6□□□□□ -0.07
HMGCS1Q01581 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 ST20-AS1-201ENST00000560255 4223 ntBASIC14.59□□□□□ -0.07
HMGCS1Q01581 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGCS1Q01581 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
HMGCS1Q01581 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.07
HMGCS1Q01581 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.58□□□□□ -0.07
HMGCS1Q01581 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
HMGCS1Q01581 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.58□□□□□ -0.07
HMGCS1Q01581 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HMGCS1Q01581 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
HMGCS1Q01581 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.58□□□□□ -0.07
HMGCS1Q01581 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.58□□□□□ -0.07
HMGCS1Q01581 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
HMGCS1Q01581 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGCS1Q01581 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGCS1Q01581 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGCS1Q01581 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGCS1Q01581 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGCS1Q01581 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms