Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC17.61■□□□□ 0.41
RHBDL3P58872 MIR3907-201ENST00000579424 151 ntBASIC17.61■□□□□ 0.41
RHBDL3P58872 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.61■□□□□ 0.41
RHBDL3P58872 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC17.61■□□□□ 0.41
RHBDL3P58872 CDK7-214ENST00000626796 358 ntTSL 5 BASIC17.61■□□□□ 0.41
RHBDL3P58872 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC17.61■□□□□ 0.41
RHBDL3P58872 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.61■□□□□ 0.41
RHBDL3P58872 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RHBDL3P58872 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.61■□□□□ 0.41
RHBDL3P58872 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RHBDL3P58872 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RHBDL3P58872 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.61■□□□□ 0.41
RHBDL3P58872 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC17.61■□□□□ 0.41
RHBDL3P58872 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RHBDL3P58872 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
RHBDL3P58872 TMBIM7P-202ENST00000641474 1516 ntBASIC17.61■□□□□ 0.41
RHBDL3P58872 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RHBDL3P58872 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
RHBDL3P58872 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RHBDL3P58872 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
RHBDL3P58872 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RHBDL3P58872 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RHBDL3P58872 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RHBDL3P58872 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.61■□□□□ 0.41
RHBDL3P58872 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RHBDL3P58872 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17.6■□□□□ 0.41
RHBDL3P58872 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.6■□□□□ 0.41
RHBDL3P58872 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
RHBDL3P58872 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.6■□□□□ 0.41
RHBDL3P58872 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC17.6■□□□□ 0.41
RHBDL3P58872 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
RHBDL3P58872 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC17.6■□□□□ 0.41
RHBDL3P58872 HLA-DPB2-205ENST00000435074 1188 ntBASIC17.6■□□□□ 0.41
RHBDL3P58872 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC17.6■□□□□ 0.41
RHBDL3P58872 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC17.6■□□□□ 0.41
RHBDL3P58872 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
RHBDL3P58872 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
RHBDL3P58872 AC020922.3-201ENST00000595064 547 ntBASIC17.6■□□□□ 0.41
RHBDL3P58872 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
RHBDL3P58872 AL353770.1-201ENST00000614915 403 ntBASIC17.6■□□□□ 0.41
RHBDL3P58872 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC17.6■□□□□ 0.41
RHBDL3P58872 MRPL37P1-201ENST00000592451 1337 ntBASIC17.6■□□□□ 0.41
RHBDL3P58872 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.6■□□□□ 0.41
RHBDL3P58872 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
RHBDL3P58872 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
RHBDL3P58872 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.6■□□□□ 0.41
RHBDL3P58872 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
RHBDL3P58872 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
RHBDL3P58872 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RHBDL3P58872 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RHBDL3P58872 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RHBDL3P58872 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RHBDL3P58872 LINC00554-201ENST00000564841 3011 ntBASIC17.59■□□□□ 0.41
RHBDL3P58872 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RHBDL3P58872 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.59■□□□□ 0.41
RHBDL3P58872 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RHBDL3P58872 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.59■□□□□ 0.41
RHBDL3P58872 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RHBDL3P58872 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RHBDL3P58872 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RHBDL3P58872 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.59■□□□□ 0.41
RHBDL3P58872 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RHBDL3P58872 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC17.59■□□□□ 0.41
RHBDL3P58872 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
RHBDL3P58872 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.59■□□□□ 0.41
RHBDL3P58872 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.59■□□□□ 0.41
RHBDL3P58872 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RHBDL3P58872 AC007274.2-201ENST00000421675 662 ntBASIC17.59■□□□□ 0.41
RHBDL3P58872 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC17.59■□□□□ 0.41
RHBDL3P58872 AC073150.1-201ENST00000450406 1084 ntBASIC17.59■□□□□ 0.41
RHBDL3P58872 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RHBDL3P58872 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC17.59■□□□□ 0.41
RHBDL3P58872 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC17.59■□□□□ 0.41
RHBDL3P58872 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC17.59■□□□□ 0.41
RHBDL3P58872 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC17.59■□□□□ 0.41
RHBDL3P58872 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC17.59■□□□□ 0.41
RHBDL3P58872 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC17.59■□□□□ 0.41
RHBDL3P58872 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RHBDL3P58872 AL157813.1-201ENST00000612996 587 ntBASIC17.59■□□□□ 0.41
RHBDL3P58872 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms