Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
FOXA1P55317 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA1P55317 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.63□□□□□ -0.07
FOXA1P55317 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
FOXA1P55317 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
FOXA1P55317 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.63□□□□□ -0.07
FOXA1P55317 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.63□□□□□ -0.07
FOXA1P55317 AC022447.6-201ENST00000515522 438 ntBASIC14.63□□□□□ -0.07
FOXA1P55317 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA1P55317 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.63□□□□□ -0.07
FOXA1P55317 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.63□□□□□ -0.07
FOXA1P55317 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.63□□□□□ -0.07
FOXA1P55317 AC093512.1-201ENST00000617969 520 ntBASIC14.63□□□□□ -0.07
FOXA1P55317 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.63□□□□□ -0.07
FOXA1P55317 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
FOXA1P55317 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.63□□□□□ -0.07
FOXA1P55317 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
FOXA1P55317 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
FOXA1P55317 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA1P55317 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
FOXA1P55317 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA1P55317 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA1P55317 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.62□□□□□ -0.07
FOXA1P55317 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
FOXA1P55317 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
FOXA1P55317 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
FOXA1P55317 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.62□□□□□ -0.07
FOXA1P55317 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
FOXA1P55317 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA1P55317 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
FOXA1P55317 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.62□□□□□ -0.07
FOXA1P55317 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.62□□□□□ -0.07
FOXA1P55317 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
FOXA1P55317 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 DOC2GP-202ENST00000514950 1163 ntBASIC14.62□□□□□ -0.07
FOXA1P55317 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.62□□□□□ -0.07
FOXA1P55317 TPRX2P-201ENST00000535362 881 ntBASIC14.62□□□□□ -0.07
FOXA1P55317 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.62□□□□□ -0.07
FOXA1P55317 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.62□□□□□ -0.07
FOXA1P55317 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.62□□□□□ -0.07
FOXA1P55317 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.62□□□□□ -0.07
FOXA1P55317 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.62□□□□□ -0.07
FOXA1P55317 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.62□□□□□ -0.07
FOXA1P55317 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA1P55317 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.62□□□□□ -0.07
FOXA1P55317 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA1P55317 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.62□□□□□ -0.07
FOXA1P55317 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA1P55317 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
FOXA1P55317 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
FOXA1P55317 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
FOXA1P55317 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA1P55317 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.62□□□□□ -0.07
FOXA1P55317 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA1P55317 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.62□□□□□ -0.07
FOXA1P55317 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
FOXA1P55317 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
FOXA1P55317 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.61□□□□□ -0.07
FOXA1P55317 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
FOXA1P55317 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA1P55317 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
FOXA1P55317 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms