Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC12.46□□□□□ -0.41
CDX1P47902 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC12.46□□□□□ -0.41
CDX1P47902 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC12.46□□□□□ -0.41
CDX1P47902 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC12.46□□□□□ -0.41
CDX1P47902 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC12.46□□□□□ -0.41
CDX1P47902 SDHAP3-202ENST00000515467 728 ntBASIC12.46□□□□□ -0.41
CDX1P47902 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC12.46□□□□□ -0.41
CDX1P47902 COQ6-210ENST00000554920 649 ntTSL 3 BASIC12.46□□□□□ -0.41
CDX1P47902 AC009407.1-201ENST00000568958 598 ntBASIC12.46□□□□□ -0.41
CDX1P47902 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
CDX1P47902 YTHDF3-AS1-201ENST00000603538 718 ntBASIC12.46□□□□□ -0.41
CDX1P47902 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
CDX1P47902 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
CDX1P47902 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC12.46□□□□□ -0.41
CDX1P47902 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
CDX1P47902 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
CDX1P47902 TKT-201ENST00000296289 1931 ntTSL 5 BASIC12.46□□□□□ -0.42
CDX1P47902 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
CDX1P47902 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.46□□□□□ -0.42
CDX1P47902 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
CDX1P47902 CYP4F24P-201ENST00000586049 1580 ntBASIC12.46□□□□□ -0.42
CDX1P47902 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CDX1P47902 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CDX1P47902 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CDX1P47902 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.42
CDX1P47902 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
CDX1P47902 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
CDX1P47902 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC12.46□□□□□ -0.42
CDX1P47902 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
CDX1P47902 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
CDX1P47902 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
CDX1P47902 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC12.45□□□□□ -0.42
CDX1P47902 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC12.45□□□□□ -0.42
CDX1P47902 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 FXR1-221ENST00000491674 365 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC12.45□□□□□ -0.42
CDX1P47902 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC12.45□□□□□ -0.42
CDX1P47902 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 POLD4-211ENST00000539074 714 ntTSL 3 BASIC12.45□□□□□ -0.42
CDX1P47902 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 AC190387.1-201ENST00000551683 408 ntBASIC12.45□□□□□ -0.42
CDX1P47902 AC010336.2-201ENST00000564226 506 ntBASIC12.45□□□□□ -0.42
CDX1P47902 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC12.45□□□□□ -0.42
CDX1P47902 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 AL136982.4-201ENST00000437689 1740 ntBASIC12.45□□□□□ -0.42
CDX1P47902 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 INVS-201ENST00000262456 2968 ntTSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
CDX1P47902 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CDX1P47902 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 C2-206ENST00000442278 2434 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC12.45□□□□□ -0.42
CDX1P47902 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms