Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.72□□□□□ -0.05
HNF4AP41235 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 AC007686.3-201ENST00000619017 3487 ntBASIC14.72□□□□□ -0.05
HNF4AP41235 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 GRK6P1-201ENST00000400595 1711 ntBASIC14.72□□□□□ -0.05
HNF4AP41235 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.72□□□□□ -0.05
HNF4AP41235 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.71□□□□□ -0.05
HNF4AP41235 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.71□□□□□ -0.05
HNF4AP41235 INTS4P2-202ENST00000614726 2019 ntBASIC14.71□□□□□ -0.05
HNF4AP41235 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.71□□□□□ -0.05
HNF4AP41235 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.71□□□□□ -0.05
HNF4AP41235 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
HNF4AP41235 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HNF4AP41235 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 AL158070.2-201ENST00000623713 1621 ntBASIC14.71□□□□□ -0.05
HNF4AP41235 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.71□□□□□ -0.05
HNF4AP41235 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.71□□□□□ -0.05
HNF4AP41235 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HNF4AP41235 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.71□□□□□ -0.05
HNF4AP41235 AL442647.2-201ENST00000429864 857 ntBASIC14.71□□□□□ -0.05
HNF4AP41235 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.71□□□□□ -0.05
HNF4AP41235 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.71□□□□□ -0.05
HNF4AP41235 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.71□□□□□ -0.05
HNF4AP41235 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.71□□□□□ -0.05
HNF4AP41235 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.71□□□□□ -0.05
HNF4AP41235 AL359711.2-201ENST00000563105 872 ntBASIC14.71□□□□□ -0.05
HNF4AP41235 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.71□□□□□ -0.05
HNF4AP41235 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
HNF4AP41235 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.71□□□□□ -0.05
HNF4AP41235 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.71□□□□□ -0.05
HNF4AP41235 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.71□□□□□ -0.05
HNF4AP41235 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.71□□□□□ -0.05
HNF4AP41235 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.71□□□□□ -0.05
HNF4AP41235 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HNF4AP41235 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
HNF4AP41235 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
HNF4AP41235 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HNF4AP41235 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HNF4AP41235 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HNF4AP41235 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.71□□□□□ -0.06
HNF4AP41235 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
HNF4AP41235 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HNF4AP41235 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.71□□□□□ -0.06
HNF4AP41235 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HNF4AP41235 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
HNF4AP41235 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
HNF4AP41235 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HNF4AP41235 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
HNF4AP41235 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.71□□□□□ -0.06
HNF4AP41235 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.7□□□□□ -0.06
HNF4AP41235 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.7□□□□□ -0.06
HNF4AP41235 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 AC005089.1-201ENST00000619486 2241 ntBASIC14.7□□□□□ -0.06
HNF4AP41235 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.7□□□□□ -0.06
HNF4AP41235 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
HNF4AP41235 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 AC106881.1-201ENST00000605849 3329 ntBASIC14.7□□□□□ -0.06
HNF4AP41235 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.7□□□□□ -0.06
HNF4AP41235 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.7□□□□□ -0.06
HNF4AP41235 C1QBPP1-201ENST00000400117 770 ntBASIC14.7□□□□□ -0.06
HNF4AP41235 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.7□□□□□ -0.06
HNF4AP41235 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.7□□□□□ -0.06
HNF4AP41235 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms