Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
SMARCA1P28370 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
SMARCA1P28370 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SMARCA1P28370 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
SMARCA1P28370 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.21■□□□□ 0.35
SMARCA1P28370 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC17.21■□□□□ 0.35
SMARCA1P28370 Z93015.1-201ENST00000451718 390 ntBASIC17.21■□□□□ 0.35
SMARCA1P28370 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SMARCA1P28370 RPL13AP20-201ENST00000459725 609 ntBASIC17.21■□□□□ 0.35
SMARCA1P28370 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC17.21■□□□□ 0.35
SMARCA1P28370 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SMARCA1P28370 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SMARCA1P28370 FAM86HP-204ENST00000513466 959 ntBASIC17.21■□□□□ 0.35
SMARCA1P28370 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC17.21■□□□□ 0.35
SMARCA1P28370 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC17.21■□□□□ 0.35
SMARCA1P28370 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.21■□□□□ 0.35
SMARCA1P28370 MIR4741-201ENST00000579822 90 ntBASIC17.21■□□□□ 0.35
SMARCA1P28370 AC009542.2-202ENST00000619004 1067 ntBASIC17.21■□□□□ 0.35
SMARCA1P28370 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SMARCA1P28370 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 LINC00554-201ENST00000564841 3011 ntBASIC17.21■□□□□ 0.35
SMARCA1P28370 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.21■□□□□ 0.35
SMARCA1P28370 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SMARCA1P28370 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMARCA1P28370 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SMARCA1P28370 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SMARCA1P28370 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.21■□□□□ 0.34
SMARCA1P28370 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.2■□□□□ 0.34
SMARCA1P28370 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
SMARCA1P28370 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
SMARCA1P28370 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.2■□□□□ 0.34
SMARCA1P28370 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 AC092135.3-201ENST00000624151 1846 ntBASIC17.2■□□□□ 0.34
SMARCA1P28370 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 RBM38-204ENST00000371219 760 ntTSL 2 BASIC17.2■□□□□ 0.34
SMARCA1P28370 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.2■□□□□ 0.34
SMARCA1P28370 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 TISP43-201ENST00000409793 538 ntTSL 4 BASIC17.2■□□□□ 0.34
SMARCA1P28370 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.2■□□□□ 0.34
SMARCA1P28370 RPSAP36-202ENST00000494591 1261 ntBASIC17.2■□□□□ 0.34
SMARCA1P28370 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
SMARCA1P28370 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.2■□□□□ 0.34
SMARCA1P28370 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
SMARCA1P28370 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.2■□□□□ 0.34
SMARCA1P28370 KLK3-211ENST00000597483 810 ntTSL 2 BASIC17.2■□□□□ 0.34
SMARCA1P28370 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.2■□□□□ 0.34
SMARCA1P28370 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 SHC1P1-201ENST00000425230 1745 ntBASIC17.2■□□□□ 0.34
SMARCA1P28370 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 AC023824.1-201ENST00000562945 2975 ntBASIC17.2■□□□□ 0.34
SMARCA1P28370 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.2■□□□□ 0.34
SMARCA1P28370 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.2■□□□□ 0.34
SMARCA1P28370 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.2■□□□□ 0.34
SMARCA1P28370 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMARCA1P28370 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.19■□□□□ 0.34
SMARCA1P28370 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SMARCA1P28370 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms