Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.6□□□□□ -0.07
HOXC4P09017 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXC4P09017 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXC4P09017 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
HOXC4P09017 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXC4P09017 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXC4P09017 TUBBP5-203ENST00000508529 1334 ntBASIC14.6□□□□□ -0.07
HOXC4P09017 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HOXC4P09017 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
HOXC4P09017 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXC4P09017 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
HOXC4P09017 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
HOXC4P09017 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXC4P09017 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HOXC4P09017 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
HOXC4P09017 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
HOXC4P09017 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.59□□□□□ -0.07
HOXC4P09017 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.59□□□□□ -0.07
HOXC4P09017 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
HOXC4P09017 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 AC023157.3-201ENST00000619086 2088 ntBASIC14.59□□□□□ -0.07
HOXC4P09017 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
HOXC4P09017 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
HOXC4P09017 NPPA-201ENST00000376476 728 ntTSL 3 BASIC14.59□□□□□ -0.07
HOXC4P09017 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
HOXC4P09017 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC14.59□□□□□ -0.07
HOXC4P09017 BCYRN1-201ENST00000418539 200 ntBASIC14.59□□□□□ -0.07
HOXC4P09017 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.59□□□□□ -0.07
HOXC4P09017 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.59□□□□□ -0.07
HOXC4P09017 MARK2P5-201ENST00000507649 634 ntBASIC14.59□□□□□ -0.07
HOXC4P09017 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.59□□□□□ -0.07
HOXC4P09017 EID1-202ENST00000560490 584 ntTSL 3 BASIC14.59□□□□□ -0.07
HOXC4P09017 AC013355.1-201ENST00000562625 723 ntBASIC14.59□□□□□ -0.07
HOXC4P09017 NDUFV2P1-201ENST00000596415 907 ntBASIC14.59□□□□□ -0.07
HOXC4P09017 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC14.59□□□□□ -0.07
HOXC4P09017 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
HOXC4P09017 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.59□□□□□ -0.07
HOXC4P09017 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.59□□□□□ -0.07
HOXC4P09017 PCBP2-OT1-201ENST00000634357 590 ntBASIC14.59□□□□□ -0.07
HOXC4P09017 Z98259.2-201ENST00000641583 609 ntBASIC14.59□□□□□ -0.07
HOXC4P09017 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.59□□□□□ -0.07
HOXC4P09017 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
HOXC4P09017 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.59□□□□□ -0.07
HOXC4P09017 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
HOXC4P09017 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.59□□□□□ -0.07
HOXC4P09017 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.59□□□□□ -0.07
HOXC4P09017 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 AL008718.2-201ENST00000609206 1313 ntBASIC14.59□□□□□ -0.07
HOXC4P09017 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
HOXC4P09017 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.59□□□□□ -0.07
HOXC4P09017 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.59□□□□□ -0.07
HOXC4P09017 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.59□□□□□ -0.07
HOXC4P09017 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
HOXC4P09017 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
HOXC4P09017 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
HOXC4P09017 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
HOXC4P09017 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
HOXC4P09017 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HOXC4P09017 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.58□□□□□ -0.07
HOXC4P09017 LINC00554-201ENST00000564841 3011 ntBASIC14.58□□□□□ -0.07
HOXC4P09017 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
HOXC4P09017 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXC4P09017 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.58□□□□□ -0.08
HOXC4P09017 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 AL157407.1-201ENST00000435784 904 ntBASIC14.58□□□□□ -0.08
HOXC4P09017 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXC4P09017 AC104073.2-201ENST00000453737 312 ntBASIC14.58□□□□□ -0.08
HOXC4P09017 OARD1-204ENST00000464633 717 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXC4P09017 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 RPL18P13-201ENST00000478088 569 ntBASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms