Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 RNLS-203ENST00000437752 525 ntTSL 2 BASIC20.61■□□□□ 0.89
NPHP4O75161 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 RPS23-207ENST00000511844 530 ntTSL 2 BASIC20.61■□□□□ 0.89
NPHP4O75161 AC090136.2-201ENST00000517809 420 ntBASIC20.61■□□□□ 0.89
NPHP4O75161 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC20.61■□□□□ 0.89
NPHP4O75161 FOXN3-AS2-201ENST00000554071 1262 ntBASIC20.61■□□□□ 0.89
NPHP4O75161 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC20.61■□□□□ 0.89
NPHP4O75161 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC20.61■□□□□ 0.89
NPHP4O75161 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC20.61■□□□□ 0.89
NPHP4O75161 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC20.61■□□□□ 0.89
NPHP4O75161 AP000769.1-203ENST00000637245 208 ntBASIC20.61■□□□□ 0.89
NPHP4O75161 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 GCK-209ENST00000616242 2260 ntTSL 5 BASIC20.6■□□□□ 0.89
NPHP4O75161 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
NPHP4O75161 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
NPHP4O75161 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
NPHP4O75161 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.6■□□□□ 0.89
NPHP4O75161 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC20.6■□□□□ 0.89
NPHP4O75161 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC20.6■□□□□ 0.89
NPHP4O75161 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 NME2-201ENST00000393183 568 ntTSL 2 BASIC20.6■□□□□ 0.89
NPHP4O75161 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC20.6■□□□□ 0.89
NPHP4O75161 AC008026.2-201ENST00000495438 348 ntBASIC20.6■□□□□ 0.89
NPHP4O75161 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC20.6■□□□□ 0.89
NPHP4O75161 PMEL-214ENST00000550447 901 ntTSL 3 BASIC20.6■□□□□ 0.89
NPHP4O75161 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC20.6■□□□□ 0.89
NPHP4O75161 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC20.6■□□□□ 0.89
NPHP4O75161 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC20.6■□□□□ 0.89
NPHP4O75161 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC20.6■□□□□ 0.89
NPHP4O75161 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
NPHP4O75161 PCDHB19P-201ENST00000570871 2371 ntBASIC20.6■□□□□ 0.89
NPHP4O75161 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP4O75161 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
NPHP4O75161 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
NPHP4O75161 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC20.59■□□□□ 0.89
NPHP4O75161 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC20.59■□□□□ 0.89
NPHP4O75161 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC20.59■□□□□ 0.89
NPHP4O75161 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC20.59■□□□□ 0.89
NPHP4O75161 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC20.59■□□□□ 0.89
NPHP4O75161 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC20.59■□□□□ 0.89
NPHP4O75161 DRG2-220ENST00000583355 891 ntTSL 3 BASIC20.59■□□□□ 0.89
NPHP4O75161 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC20.59■□□□□ 0.89
NPHP4O75161 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC20.59■□□□□ 0.89
NPHP4O75161 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC20.59■□□□□ 0.89
NPHP4O75161 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP4O75161 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC20.58■□□□□ 0.89
NPHP4O75161 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP4O75161 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP4O75161 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
NPHP4O75161 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC20.58■□□□□ 0.89
NPHP4O75161 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP4O75161 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP4O75161 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP4O75161 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.58■□□□□ 0.89
NPHP4O75161 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP4O75161 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP4O75161 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC20.58■□□□□ 0.88
NPHP4O75161 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP4O75161 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC20.58■□□□□ 0.88
NPHP4O75161 VENTXP4-201ENST00000449029 958 ntBASIC20.58■□□□□ 0.88
NPHP4O75161 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC20.58■□□□□ 0.88
NPHP4O75161 CHCHD2P2-201ENST00000503744 321 ntBASIC20.58■□□□□ 0.88
NPHP4O75161 HINT1-205ENST00000508488 703 ntTSL 2 BASIC20.58■□□□□ 0.88
NPHP4O75161 NAA40-205ENST00000539656 577 ntTSL 4 BASIC20.58■□□□□ 0.88
NPHP4O75161 COX5A-205ENST00000568517 582 ntTSL 3 BASIC20.58■□□□□ 0.88
NPHP4O75161 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC20.58■□□□□ 0.88
NPHP4O75161 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC20.58■□□□□ 0.88
NPHP4O75161 AL160191.2-201ENST00000603975 601 ntBASIC20.58■□□□□ 0.88
NPHP4O75161 BRD7P5-201ENST00000299197 1822 ntBASIC20.58■□□□□ 0.88
NPHP4O75161 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
NPHP4O75161 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms