Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
LDB3O75112 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
LDB3O75112 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 CICP24-201ENST00000605464 2705 ntBASIC14.23□□□□□ -0.13
LDB3O75112 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.23□□□□□ -0.13
LDB3O75112 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LDB3O75112 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 AC023090.2-201ENST00000625182 2110 ntBASIC14.23□□□□□ -0.13
LDB3O75112 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
LDB3O75112 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
LDB3O75112 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
LDB3O75112 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.23□□□□□ -0.13
LDB3O75112 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.23□□□□□ -0.13
LDB3O75112 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.23□□□□□ -0.13
LDB3O75112 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.23□□□□□ -0.13
LDB3O75112 AC026434.2-201ENST00000506094 1078 ntBASIC14.23□□□□□ -0.13
LDB3O75112 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.23□□□□□ -0.13
LDB3O75112 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.23□□□□□ -0.13
LDB3O75112 GNRHR2-203ENST00000581100 1187 ntBASIC14.23□□□□□ -0.13
LDB3O75112 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LDB3O75112 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
LDB3O75112 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
LDB3O75112 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LDB3O75112 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.23□□□□□ -0.13
LDB3O75112 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.23□□□□□ -0.13
LDB3O75112 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
LDB3O75112 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
LDB3O75112 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LDB3O75112 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.22□□□□□ -0.13
LDB3O75112 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
LDB3O75112 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.22□□□□□ -0.13
LDB3O75112 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 FGD5P1-202ENST00000614866 2498 ntBASIC14.22□□□□□ -0.13
LDB3O75112 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
LDB3O75112 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.22□□□□□ -0.13
LDB3O75112 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.22□□□□□ -0.13
LDB3O75112 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.22□□□□□ -0.13
LDB3O75112 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
LDB3O75112 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.22□□□□□ -0.13
LDB3O75112 AC092933.1-201ENST00000393644 945 ntBASIC14.22□□□□□ -0.13
LDB3O75112 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
LDB3O75112 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.22□□□□□ -0.13
LDB3O75112 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.22□□□□□ -0.13
LDB3O75112 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.22□□□□□ -0.13
LDB3O75112 CROCCP4-201ENST00000457096 498 ntBASIC14.22□□□□□ -0.13
LDB3O75112 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.22□□□□□ -0.13
LDB3O75112 FTH1P14-201ENST00000482930 551 ntBASIC14.22□□□□□ -0.13
LDB3O75112 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.22□□□□□ -0.13
LDB3O75112 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.22□□□□□ -0.13
LDB3O75112 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.22□□□□□ -0.13
LDB3O75112 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.22□□□□□ -0.13
LDB3O75112 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.22□□□□□ -0.13
LDB3O75112 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.22□□□□□ -0.13
LDB3O75112 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.22□□□□□ -0.13
LDB3O75112 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
LDB3O75112 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
LDB3O75112 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.22□□□□□ -0.13
LDB3O75112 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms