Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC006328.1-201ENST00000437571 379 ntBASIC25.07■■□□□ 1.6
CUX2O14529 CICP12-201ENST00000455801 843 ntBASIC25.07■■□□□ 1.6
CUX2O14529 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC25.07■■□□□ 1.6
CUX2O14529 RN7SL665P-201ENST00000578793 300 ntBASIC25.07■■□□□ 1.6
CUX2O14529 AP006248.1-201ENST00000610471 67 ntBASIC25.07■■□□□ 1.6
CUX2O14529 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC25.07■■□□□ 1.6
CUX2O14529 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC25.07■■□□□ 1.6
CUX2O14529 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CUX2O14529 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC25.07■■□□□ 1.6
CUX2O14529 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC25.07■■□□□ 1.6
CUX2O14529 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
CUX2O14529 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CUX2O14529 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CUX2O14529 AC024909.3-201ENST00000611513 2257 ntBASIC25.06■■□□□ 1.6
CUX2O14529 PYY2-201ENST00000315776 282 ntBASIC25.06■■□□□ 1.6
CUX2O14529 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CUX2O14529 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC25.06■■□□□ 1.6
CUX2O14529 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC25.06■■□□□ 1.6
CUX2O14529 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC25.06■■□□□ 1.6
CUX2O14529 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC25.06■■□□□ 1.6
CUX2O14529 AC006116.2-201ENST00000589958 988 ntBASIC25.06■■□□□ 1.6
CUX2O14529 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC25.06■■□□□ 1.6
CUX2O14529 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC25.06■■□□□ 1.6
CUX2O14529 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CUX2O14529 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC25.06■■□□□ 1.6
CUX2O14529 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC25.06■■□□□ 1.6
CUX2O14529 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CUX2O14529 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
CUX2O14529 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CUX2O14529 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC25.05■■□□□ 1.6
CUX2O14529 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CUX2O14529 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC25.05■■□□□ 1.6
CUX2O14529 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CUX2O14529 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
CUX2O14529 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC25.05■■□□□ 1.6
CUX2O14529 AC098934.1-203ENST00000442868 1262 ntBASIC25.05■■□□□ 1.6
CUX2O14529 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC25.05■■□□□ 1.6
CUX2O14529 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
CUX2O14529 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC25.05■■□□□ 1.6
CUX2O14529 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC25.05■■□□□ 1.6
CUX2O14529 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC25.05■■□□□ 1.6
CUX2O14529 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC25.05■■□□□ 1.6
CUX2O14529 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC25.05■■□□□ 1.6
CUX2O14529 AC005865.2-202ENST00000635814 725 ntBASIC25.05■■□□□ 1.6
CUX2O14529 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CUX2O14529 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC25.05■■□□□ 1.6
CUX2O14529 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC25.05■■□□□ 1.6
CUX2O14529 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC25.05■■□□□ 1.6
CUX2O14529 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CUX2O14529 BLK-205ENST00000529894 2017 ntTSL 5 BASIC25.05■■□□□ 1.6
CUX2O14529 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CUX2O14529 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC25.05■■□□□ 1.6
CUX2O14529 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX2O14529 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX2O14529 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
CUX2O14529 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC25.04■■□□□ 1.6
CUX2O14529 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC25.04■■□□□ 1.6
CUX2O14529 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
CUX2O14529 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
CUX2O14529 REXO1L4P-201ENST00000605109 1937 ntBASIC25.04■■□□□ 1.6
CUX2O14529 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CUX2O14529 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX2O14529 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC25.04■■□□□ 1.6
CUX2O14529 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX2O14529 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX2O14529 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX2O14529 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX2O14529 ACE-203ENST00000413513 2237 ntTSL 2 BASIC25.04■■□□□ 1.6
CUX2O14529 SLC9A7P1-202ENST00000556476 2239 ntBASIC25.04■■□□□ 1.6
CUX2O14529 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX2O14529 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC25.04■■□□□ 1.6
CUX2O14529 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
CUX2O14529 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
CUX2O14529 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX2O14529 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX2O14529 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
CUX2O14529 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
CUX2O14529 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX2O14529 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX2O14529 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC25.03■■□□□ 1.6
CUX2O14529 MIR645-201ENST00000385283 94 ntBASIC25.03■■□□□ 1.6
CUX2O14529 HLA-DMA-202ENST00000395303 1007 ntBASIC25.03■■□□□ 1.6
CUX2O14529 KRT8P6-201ENST00000399259 1207 ntBASIC25.03■■□□□ 1.6
CUX2O14529 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC25.03■■□□□ 1.6
CUX2O14529 AC104961.1-201ENST00000427605 771 ntBASIC25.03■■□□□ 1.6
CUX2O14529 PFN2-212ENST00000490975 858 ntTSL 4 BASIC25.03■■□□□ 1.6
CUX2O14529 RPS23-207ENST00000511844 530 ntTSL 2 BASIC25.03■■□□□ 1.6
CUX2O14529 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
CUX2O14529 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX2O14529 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX2O14529 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX2O14529 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC25.03■■□□□ 1.6
CUX2O14529 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CUX2O14529 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC25.03■■□□□ 1.6
CUX2O14529 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC25.03■■□□□ 1.6
CUX2O14529 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX2O14529 AC092127.1-201ENST00000567093 3455 ntBASIC25.03■■□□□ 1.6
CUX2O14529 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX2O14529 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX2O14529 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC25.02■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms