Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TRIM49D1C9J1S8 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 AC069262.1-201ENST00000539058 672 ntBASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 MIR3687-2-201ENST00000577708 61 ntBASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 MIR3687-1-201ENST00000614492 61 ntBASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM49D1C9J1S8 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 AC004461.2-201ENST00000629517 803 ntBASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 SRC-202ENST00000373558 4304 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM49D1C9J1S8 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms