Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 AL022342.1-201ENST00000400363 863 ntBASIC13.18□□□□□ -0.3
SHISA3A0PJX4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 AL592309.1-201ENST00000443127 649 ntBASIC13.18□□□□□ -0.3
SHISA3A0PJX4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 KRT18P43-201ENST00000469825 1281 ntBASIC13.18□□□□□ -0.3
SHISA3A0PJX4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 AC018529.1-201ENST00000613063 361 ntBASIC13.18□□□□□ -0.3
SHISA3A0PJX4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 CITED2-204ENST00000618718 901 ntTSL 2 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 AC073548.1-201ENST00000624088 1882 ntBASIC13.18□□□□□ -0.3
SHISA3A0PJX4 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 TCAM1P-207ENST00000485295 1537 ntBASIC13.18□□□□□ -0.3
SHISA3A0PJX4 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SHISA3A0PJX4 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 RN7SL832P-201ENST00000607781 1756 ntBASIC13.17□□□□□ -0.3
SHISA3A0PJX4 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 KRT8P14-201ENST00000414254 1442 ntBASIC13.17□□□□□ -0.3
SHISA3A0PJX4 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 RPL13AP23-201ENST00000480739 586 ntBASIC13.17□□□□□ -0.3
SHISA3A0PJX4 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 ALG1L8P-201ENST00000533887 760 ntBASIC13.17□□□□□ -0.3
SHISA3A0PJX4 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 AC120114.3-201ENST00000611923 658 ntBASIC13.17□□□□□ -0.3
SHISA3A0PJX4 LINC00628-201ENST00000628516 1289 ntBASIC13.17□□□□□ -0.3
SHISA3A0PJX4 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 AC114271.1-201ENST00000612689 2813 ntBASIC13.17□□□□□ -0.3
SHISA3A0PJX4 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SHISA3A0PJX4 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SHISA3A0PJX4 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.16□□□□□ -0.3
SHISA3A0PJX4 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.16□□□□□ -0.3
SHISA3A0PJX4 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms