Protein–RNA interactions for Protein: Q9HBX3

SND1-IT1, Uncharacterized protein encoded by SND1-IT1, humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-IT1Q9HBX3 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SND1-IT1Q9HBX3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SND1-IT1Q9HBX3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SND1-IT1Q9HBX3 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SND1-IT1Q9HBX3 RNF166-209ENST00000567844 633 ntTSL 5 BASIC15.32■□□□□ 0.04
SND1-IT1Q9HBX3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
SND1-IT1Q9HBX3 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
SND1-IT1Q9HBX3 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC15.32■□□□□ 0.04
SND1-IT1Q9HBX3 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 RPS2P35-201ENST00000443417 897 ntBASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 MIR6089-201ENST00000616698 64 ntBASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SND1-IT1Q9HBX3 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SND1-IT1Q9HBX3 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SND1-IT1Q9HBX3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SND1-IT1Q9HBX3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SND1-IT1Q9HBX3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SND1-IT1Q9HBX3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SND1-IT1Q9HBX3 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SND1-IT1Q9HBX3 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SND1-IT1Q9HBX3 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC15.3■□□□□ 0.04
SND1-IT1Q9HBX3 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SND1-IT1Q9HBX3 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SND1-IT1Q9HBX3 STK25-234ENST00000535007 2459 ntTSL 2 BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 ZNRF2P2-203ENST00000454624 420 ntBASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SND1-IT1Q9HBX3 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 LINC00565-201ENST00000562710 2331 ntBASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
SND1-IT1Q9HBX3 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SND1-IT1Q9HBX3 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SND1-IT1Q9HBX3 EP400NL-214ENST00000641289 2402 ntBASIC15.27■□□□□ 0.04
SND1-IT1Q9HBX3 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC15.27■□□□□ 0.04
SND1-IT1Q9HBX3 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SND1-IT1Q9HBX3 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC15.27■□□□□ 0.04
SND1-IT1Q9HBX3 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SND1-IT1Q9HBX3 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SND1-IT1Q9HBX3 CR559946.2-201ENST00000623684 991 ntBASIC15.27■□□□□ 0.04
SND1-IT1Q9HBX3 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SND1-IT1Q9HBX3 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SND1-IT1Q9HBX3 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SND1-IT1Q9HBX3 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms