Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
RNF41Q9H4P4 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC27.24■■□□□ 1.95
RNF41Q9H4P4 MTDHP2-201ENST00000601468 714 ntBASIC27.24■■□□□ 1.95
RNF41Q9H4P4 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC27.24■■□□□ 1.95
RNF41Q9H4P4 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
RNF41Q9H4P4 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RNF41Q9H4P4 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RNF41Q9H4P4 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC27.23■■□□□ 1.95
RNF41Q9H4P4 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC27.23■■□□□ 1.95
RNF41Q9H4P4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC27.23■■□□□ 1.95
RNF41Q9H4P4 MIR6722-201ENST00000617286 78 ntBASIC27.23■■□□□ 1.95
RNF41Q9H4P4 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
RNF41Q9H4P4 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC27.23■■□□□ 1.95
RNF41Q9H4P4 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC27.23■■□□□ 1.95
RNF41Q9H4P4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RNF41Q9H4P4 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
RNF41Q9H4P4 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
RNF41Q9H4P4 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC27.22■■□□□ 1.95
RNF41Q9H4P4 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC27.22■■□□□ 1.95
RNF41Q9H4P4 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
RNF41Q9H4P4 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RNF41Q9H4P4 LINC01124-201ENST00000409786 2117 ntBASIC27.22■■□□□ 1.95
RNF41Q9H4P4 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
RNF41Q9H4P4 LINC00543-201ENST00000567234 1845 ntBASIC27.21■■□□□ 1.95
RNF41Q9H4P4 AC010997.5-201ENST00000609182 354 ntBASIC27.21■■□□□ 1.95
RNF41Q9H4P4 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
RNF41Q9H4P4 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RNF41Q9H4P4 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.94
RNF41Q9H4P4 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
RNF41Q9H4P4 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC27.19■■□□□ 1.94
RNF41Q9H4P4 KRT16P3-201ENST00000439127 1283 ntBASIC27.19■■□□□ 1.94
RNF41Q9H4P4 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC27.19■■□□□ 1.94
RNF41Q9H4P4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
RNF41Q9H4P4 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
RNF41Q9H4P4 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC27.19■■□□□ 1.94
RNF41Q9H4P4 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
RNF41Q9H4P4 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
RNF41Q9H4P4 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
RNF41Q9H4P4 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC27.18■■□□□ 1.94
RNF41Q9H4P4 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
RNF41Q9H4P4 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RNF41Q9H4P4 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RNF41Q9H4P4 AL356441.2-201ENST00000443009 864 ntBASIC27.17■■□□□ 1.94
RNF41Q9H4P4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC27.17■■□□□ 1.94
RNF41Q9H4P4 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
RNF41Q9H4P4 EXOG-217ENST00000630638 197 ntTSL 5 BASIC27.17■■□□□ 1.94
RNF41Q9H4P4 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RNF41Q9H4P4 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RNF41Q9H4P4 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC27.17■■□□□ 1.94
RNF41Q9H4P4 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RNF41Q9H4P4 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RNF41Q9H4P4 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
RNF41Q9H4P4 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
RNF41Q9H4P4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC27.16■■□□□ 1.94
RNF41Q9H4P4 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
RNF41Q9H4P4 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC27.16■■□□□ 1.94
RNF41Q9H4P4 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
RNF41Q9H4P4 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC27.15■■□□□ 1.94
RNF41Q9H4P4 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC27.15■■□□□ 1.94
RNF41Q9H4P4 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
RNF41Q9H4P4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
RNF41Q9H4P4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC27.15■■□□□ 1.94
RNF41Q9H4P4 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC27.15■■□□□ 1.94
RNF41Q9H4P4 GRAMD4P7-201ENST00000578182 1232 ntBASIC27.15■■□□□ 1.94
RNF41Q9H4P4 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
RNF41Q9H4P4 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
RNF41Q9H4P4 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
RNF41Q9H4P4 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC27.15■■□□□ 1.94
RNF41Q9H4P4 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
RNF41Q9H4P4 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
RNF41Q9H4P4 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
RNF41Q9H4P4 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
RNF41Q9H4P4 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
RNF41Q9H4P4 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
RNF41Q9H4P4 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC27.13■■□□□ 1.93
RNF41Q9H4P4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
RNF41Q9H4P4 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC27.12■■□□□ 1.93
RNF41Q9H4P4 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC27.12■■□□□ 1.93
RNF41Q9H4P4 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RNF41Q9H4P4 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
RNF41Q9H4P4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
RNF41Q9H4P4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC27.12■■□□□ 1.93
RNF41Q9H4P4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC27.12■■□□□ 1.93
RNF41Q9H4P4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC27.12■■□□□ 1.93
RNF41Q9H4P4 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC27.12■■□□□ 1.93
RNF41Q9H4P4 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC27.11■■□□□ 1.93
RNF41Q9H4P4 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
RNF41Q9H4P4 CD72-202ENST00000378430 585 ntTSL 3 BASIC27.11■■□□□ 1.93
RNF41Q9H4P4 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
RNF41Q9H4P4 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
RNF41Q9H4P4 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC27.11■■□□□ 1.93
RNF41Q9H4P4 MIR6724-1-201ENST00000616420 92 ntBASIC27.11■■□□□ 1.93
RNF41Q9H4P4 MIR6724-2-201ENST00000616483 92 ntBASIC27.11■■□□□ 1.93
RNF41Q9H4P4 MIR6724-4-201ENST00000617390 92 ntBASIC27.11■■□□□ 1.93
RNF41Q9H4P4 MIR6724-3-201ENST00000622482 92 ntBASIC27.11■■□□□ 1.93
RNF41Q9H4P4 PREB-202ENST00000406567 1910 ntTSL 5 BASIC27.11■■□□□ 1.93
RNF41Q9H4P4 REST-206ENST00000612429 1376 ntTSL 5 BASIC27.1■■□□□ 1.93
RNF41Q9H4P4 REST-207ENST00000616975 1370 ntTSL 5 BASIC27.1■■□□□ 1.93
RNF41Q9H4P4 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
RNF41Q9H4P4 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms