Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NR1H4Q96RI1 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NR1H4Q96RI1 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NR1H4Q96RI1 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1H4Q96RI1 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NR1H4Q96RI1 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.62■■□□□ 1.05
NR1H4Q96RI1 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1H4Q96RI1 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1H4Q96RI1 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NR1H4Q96RI1 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
NR1H4Q96RI1 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1H4Q96RI1 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NR1H4Q96RI1 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1H4Q96RI1 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NR1H4Q96RI1 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 DUX4L28-201ENST00000623687 678 ntBASIC21.61■■□□□ 1.05
NR1H4Q96RI1 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NR1H4Q96RI1 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.6■■□□□ 1.05
NR1H4Q96RI1 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
NR1H4Q96RI1 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
NR1H4Q96RI1 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
NR1H4Q96RI1 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NR1H4Q96RI1 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NR1H4Q96RI1 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.6■■□□□ 1.05
NR1H4Q96RI1 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
NR1H4Q96RI1 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NR1H4Q96RI1 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
NR1H4Q96RI1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.59■■□□□ 1.05
NR1H4Q96RI1 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
NR1H4Q96RI1 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.59■■□□□ 1.05
NR1H4Q96RI1 MIR6090-201ENST00000622481 60 ntBASIC21.59■■□□□ 1.05
NR1H4Q96RI1 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NR1H4Q96RI1 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.59■■□□□ 1.05
NR1H4Q96RI1 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NR1H4Q96RI1 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NR1H4Q96RI1 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NR1H4Q96RI1 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NR1H4Q96RI1 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.58■■□□□ 1.05
NR1H4Q96RI1 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.05
NR1H4Q96RI1 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NR1H4Q96RI1 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.58■■□□□ 1.04
NR1H4Q96RI1 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
NR1H4Q96RI1 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.58■■□□□ 1.04
NR1H4Q96RI1 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NR1H4Q96RI1 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NR1H4Q96RI1 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.57■■□□□ 1.04
NR1H4Q96RI1 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
NR1H4Q96RI1 MIR6089-201ENST00000616698 64 ntBASIC21.57■■□□□ 1.04
NR1H4Q96RI1 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NR1H4Q96RI1 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
NR1H4Q96RI1 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NR1H4Q96RI1 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
NR1H4Q96RI1 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NR1H4Q96RI1 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
NR1H4Q96RI1 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NR1H4Q96RI1 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
NR1H4Q96RI1 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NR1H4Q96RI1 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NR1H4Q96RI1 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
NR1H4Q96RI1 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.56■■□□□ 1.04
NR1H4Q96RI1 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NR1H4Q96RI1 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NR1H4Q96RI1 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
NR1H4Q96RI1 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.55■■□□□ 1.04
NR1H4Q96RI1 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
NR1H4Q96RI1 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NR1H4Q96RI1 MIR3665-201ENST00000578708 105 ntBASIC21.55■■□□□ 1.04
NR1H4Q96RI1 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NR1H4Q96RI1 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.55■■□□□ 1.04
NR1H4Q96RI1 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NR1H4Q96RI1 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NR1H4Q96RI1 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
NR1H4Q96RI1 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
NR1H4Q96RI1 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NR1H4Q96RI1 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.55■■□□□ 1.04
NR1H4Q96RI1 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
NR1H4Q96RI1 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.54■■□□□ 1.04
NR1H4Q96RI1 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NR1H4Q96RI1 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NR1H4Q96RI1 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.54■■□□□ 1.04
NR1H4Q96RI1 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
NR1H4Q96RI1 ANOS2P-203ENST00000472227 1816 ntBASIC21.54■■□□□ 1.04
NR1H4Q96RI1 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NR1H4Q96RI1 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.53■■□□□ 1.04
NR1H4Q96RI1 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
NR1H4Q96RI1 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NR1H4Q96RI1 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
NR1H4Q96RI1 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
NR1H4Q96RI1 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms