Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
NKX2-3Q8TAU0 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
NKX2-3Q8TAU0 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
NKX2-3Q8TAU0 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC27.4■■□□□ 1.98
NKX2-3Q8TAU0 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC27.4■■□□□ 1.98
NKX2-3Q8TAU0 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC27.4■■□□□ 1.98
NKX2-3Q8TAU0 RARRES2P6-201ENST00000567333 442 ntBASIC27.4■■□□□ 1.98
NKX2-3Q8TAU0 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
NKX2-3Q8TAU0 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
NKX2-3Q8TAU0 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC27.39■■□□□ 1.98
NKX2-3Q8TAU0 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC27.39■■□□□ 1.98
NKX2-3Q8TAU0 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC27.39■■□□□ 1.98
NKX2-3Q8TAU0 PREB-202ENST00000406567 1910 ntTSL 5 BASIC27.39■■□□□ 1.97
NKX2-3Q8TAU0 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
NKX2-3Q8TAU0 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC27.38■■□□□ 1.97
NKX2-3Q8TAU0 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC27.38■■□□□ 1.97
NKX2-3Q8TAU0 AC131274.2-201ENST00000580697 1507 ntBASIC27.38■■□□□ 1.97
NKX2-3Q8TAU0 AP003733.4-201ENST00000623785 1697 ntBASIC27.38■■□□□ 1.97
NKX2-3Q8TAU0 AL117332.1-201ENST00000622628 974 ntBASIC27.38■■□□□ 1.97
NKX2-3Q8TAU0 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC27.38■■□□□ 1.97
NKX2-3Q8TAU0 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC27.38■■□□□ 1.97
NKX2-3Q8TAU0 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC27.38■■□□□ 1.97
NKX2-3Q8TAU0 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC27.37■■□□□ 1.97
NKX2-3Q8TAU0 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
NKX2-3Q8TAU0 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC27.37■■□□□ 1.97
NKX2-3Q8TAU0 GUK1-205ENST00000366722 850 ntTSL 3 BASIC27.37■■□□□ 1.97
NKX2-3Q8TAU0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC27.37■■□□□ 1.97
NKX2-3Q8TAU0 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
NKX2-3Q8TAU0 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
NKX2-3Q8TAU0 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
NKX2-3Q8TAU0 MIR3621-201ENST00000580529 85 ntBASIC27.36■■□□□ 1.97
NKX2-3Q8TAU0 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
NKX2-3Q8TAU0 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
NKX2-3Q8TAU0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC27.35■■□□□ 1.97
NKX2-3Q8TAU0 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
NKX2-3Q8TAU0 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
NKX2-3Q8TAU0 EBPL-204ENST00000378272 766 ntTSL 3 BASIC27.35■■□□□ 1.97
NKX2-3Q8TAU0 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
NKX2-3Q8TAU0 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC27.35■■□□□ 1.97
NKX2-3Q8TAU0 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC27.35■■□□□ 1.97
NKX2-3Q8TAU0 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC27.35■■□□□ 1.97
NKX2-3Q8TAU0 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
NKX2-3Q8TAU0 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
NKX2-3Q8TAU0 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC27.34■■□□□ 1.97
NKX2-3Q8TAU0 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC27.34■■□□□ 1.97
NKX2-3Q8TAU0 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC27.34■■□□□ 1.97
NKX2-3Q8TAU0 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC27.34■■□□□ 1.97
NKX2-3Q8TAU0 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
NKX2-3Q8TAU0 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
NKX2-3Q8TAU0 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
NKX2-3Q8TAU0 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC27.33■■□□□ 1.97
NKX2-3Q8TAU0 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
NKX2-3Q8TAU0 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
NKX2-3Q8TAU0 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC27.33■■□□□ 1.97
NKX2-3Q8TAU0 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
NKX2-3Q8TAU0 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
NKX2-3Q8TAU0 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
NKX2-3Q8TAU0 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
NKX2-3Q8TAU0 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
NKX2-3Q8TAU0 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC27.32■■□□□ 1.96
NKX2-3Q8TAU0 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC27.32■■□□□ 1.96
NKX2-3Q8TAU0 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
NKX2-3Q8TAU0 LBH-205ENST00000407930 756 ntTSL 2 BASIC27.32■■□□□ 1.96
NKX2-3Q8TAU0 AL356740.2-201ENST00000601559 647 ntBASIC27.32■■□□□ 1.96
NKX2-3Q8TAU0 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC27.32■■□□□ 1.96
NKX2-3Q8TAU0 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
NKX2-3Q8TAU0 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC27.32■■□□□ 1.96
NKX2-3Q8TAU0 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC27.32■■□□□ 1.96
NKX2-3Q8TAU0 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
NKX2-3Q8TAU0 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
NKX2-3Q8TAU0 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
NKX2-3Q8TAU0 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
NKX2-3Q8TAU0 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC27.31■■□□□ 1.96
NKX2-3Q8TAU0 TK2-202ENST00000417693 1046 ntTSL 2 BASIC27.31■■□□□ 1.96
NKX2-3Q8TAU0 AC104564.3-201ENST00000582367 638 ntBASIC27.31■■□□□ 1.96
NKX2-3Q8TAU0 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
NKX2-3Q8TAU0 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
NKX2-3Q8TAU0 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
NKX2-3Q8TAU0 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
NKX2-3Q8TAU0 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
NKX2-3Q8TAU0 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
NKX2-3Q8TAU0 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
NKX2-3Q8TAU0 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
NKX2-3Q8TAU0 MIR6724-1-201ENST00000616420 92 ntBASIC27.3■■□□□ 1.96
NKX2-3Q8TAU0 MIR6724-2-201ENST00000616483 92 ntBASIC27.3■■□□□ 1.96
NKX2-3Q8TAU0 MIR6724-4-201ENST00000617390 92 ntBASIC27.3■■□□□ 1.96
NKX2-3Q8TAU0 MIR6724-3-201ENST00000622482 92 ntBASIC27.3■■□□□ 1.96
NKX2-3Q8TAU0 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC27.3■■□□□ 1.96
NKX2-3Q8TAU0 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
NKX2-3Q8TAU0 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
NKX2-3Q8TAU0 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
NKX2-3Q8TAU0 AC010997.5-201ENST00000609182 354 ntBASIC27.29■■□□□ 1.96
NKX2-3Q8TAU0 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
NKX2-3Q8TAU0 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
NKX2-3Q8TAU0 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC27.29■■□□□ 1.96
NKX2-3Q8TAU0 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC27.29■■□□□ 1.96
NKX2-3Q8TAU0 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC27.29■■□□□ 1.96
NKX2-3Q8TAU0 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
NKX2-3Q8TAU0 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
NKX2-3Q8TAU0 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms