Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
USF3Q68DE3 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.76■□□□□ 0.75
USF3Q68DE3 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
USF3Q68DE3 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
USF3Q68DE3 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
USF3Q68DE3 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USF3Q68DE3 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.75■□□□□ 0.75
USF3Q68DE3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USF3Q68DE3 AC142381.2-201ENST00000566120 298 ntBASIC19.75■□□□□ 0.75
USF3Q68DE3 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USF3Q68DE3 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USF3Q68DE3 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
USF3Q68DE3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USF3Q68DE3 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USF3Q68DE3 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USF3Q68DE3 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
USF3Q68DE3 AC022211.4-201ENST00000625094 2161 ntBASIC19.75■□□□□ 0.75
USF3Q68DE3 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.74■□□□□ 0.75
USF3Q68DE3 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USF3Q68DE3 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USF3Q68DE3 PBX2P1-201ENST00000493219 1291 ntBASIC19.74■□□□□ 0.75
USF3Q68DE3 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.74■□□□□ 0.75
USF3Q68DE3 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USF3Q68DE3 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
USF3Q68DE3 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USF3Q68DE3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USF3Q68DE3 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
USF3Q68DE3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USF3Q68DE3 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USF3Q68DE3 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USF3Q68DE3 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USF3Q68DE3 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USF3Q68DE3 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USF3Q68DE3 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USF3Q68DE3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USF3Q68DE3 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
USF3Q68DE3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USF3Q68DE3 MIR6722-201ENST00000617286 78 ntBASIC19.72■□□□□ 0.75
USF3Q68DE3 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.72■□□□□ 0.75
USF3Q68DE3 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
USF3Q68DE3 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USF3Q68DE3 AC024257.2-201ENST00000549699 147 ntBASIC19.71■□□□□ 0.75
USF3Q68DE3 RARRES2P6-201ENST00000567333 442 ntBASIC19.71■□□□□ 0.75
USF3Q68DE3 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USF3Q68DE3 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USF3Q68DE3 AC135279.3-201ENST00000610945 1311 ntBASIC19.71■□□□□ 0.75
USF3Q68DE3 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.71■□□□□ 0.75
USF3Q68DE3 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USF3Q68DE3 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.7■□□□□ 0.74
USF3Q68DE3 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USF3Q68DE3 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USF3Q68DE3 AF213884.3-201ENST00000563833 479 ntBASIC19.7■□□□□ 0.74
USF3Q68DE3 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.7■□□□□ 0.74
USF3Q68DE3 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USF3Q68DE3 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.7■□□□□ 0.74
USF3Q68DE3 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.7■□□□□ 0.74
USF3Q68DE3 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
USF3Q68DE3 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.7■□□□□ 0.74
USF3Q68DE3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.69■□□□□ 0.74
USF3Q68DE3 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USF3Q68DE3 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USF3Q68DE3 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USF3Q68DE3 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
USF3Q68DE3 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USF3Q68DE3 UNC93B3-201ENST00000308076 687 ntBASIC19.69■□□□□ 0.74
USF3Q68DE3 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.69■□□□□ 0.74
USF3Q68DE3 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USF3Q68DE3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.69■□□□□ 0.74
USF3Q68DE3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USF3Q68DE3 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USF3Q68DE3 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.68■□□□□ 0.74
USF3Q68DE3 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.68■□□□□ 0.74
USF3Q68DE3 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USF3Q68DE3 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USF3Q68DE3 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.68■□□□□ 0.74
USF3Q68DE3 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USF3Q68DE3 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USF3Q68DE3 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.68■□□□□ 0.74
USF3Q68DE3 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
USF3Q68DE3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USF3Q68DE3 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USF3Q68DE3 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.67■□□□□ 0.74
USF3Q68DE3 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.67■□□□□ 0.74
USF3Q68DE3 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.67■□□□□ 0.74
USF3Q68DE3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USF3Q68DE3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.67■□□□□ 0.74
USF3Q68DE3 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
USF3Q68DE3 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.67■□□□□ 0.74
USF3Q68DE3 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
USF3Q68DE3 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.67■□□□□ 0.74
USF3Q68DE3 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.67■□□□□ 0.74
USF3Q68DE3 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USF3Q68DE3 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
USF3Q68DE3 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USF3Q68DE3 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.66■□□□□ 0.74
USF3Q68DE3 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USF3Q68DE3 EDA-201ENST00000338901 1233 ntBASIC19.66■□□□□ 0.74
USF3Q68DE3 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USF3Q68DE3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.66■□□□□ 0.74
USF3Q68DE3 AC093323.1-202ENST00000635031 2045 ntBASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms