Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL28A1Q2UY09 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL28A1Q2UY09 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL28A1Q2UY09 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL28A1Q2UY09 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.04■■□□□ 1.12
COL28A1Q2UY09 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL28A1Q2UY09 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL28A1Q2UY09 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
COL28A1Q2UY09 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL28A1Q2UY09 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL28A1Q2UY09 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL28A1Q2UY09 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.03■■□□□ 1.12
COL28A1Q2UY09 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.03■■□□□ 1.12
COL28A1Q2UY09 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL28A1Q2UY09 JTB-203ENST00000368589 1216 ntTSL 2 BASIC22.03■■□□□ 1.12
COL28A1Q2UY09 ERN1-208ENST00000606895 2068 ntBASIC22.03■■□□□ 1.12
COL28A1Q2UY09 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL28A1Q2UY09 RASA4CP-201ENST00000424092 1398 ntBASIC22.02■■□□□ 1.12
COL28A1Q2UY09 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL28A1Q2UY09 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL28A1Q2UY09 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC22.02■■□□□ 1.12
COL28A1Q2UY09 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL28A1Q2UY09 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.02■■□□□ 1.11
COL28A1Q2UY09 ESRRAP2-201ENST00000418437 1549 ntBASIC22.01■■□□□ 1.11
COL28A1Q2UY09 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC22.01■■□□□ 1.11
COL28A1Q2UY09 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.01■■□□□ 1.11
COL28A1Q2UY09 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL28A1Q2UY09 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC22.01■■□□□ 1.11
COL28A1Q2UY09 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC22.01■■□□□ 1.11
COL28A1Q2UY09 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL28A1Q2UY09 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL28A1Q2UY09 AF131216.4-201ENST00000638924 1588 ntBASIC22■■□□□ 1.11
COL28A1Q2UY09 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
COL28A1Q2UY09 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
COL28A1Q2UY09 DUX4L19-201ENST00000557448 1267 ntBASIC22■■□□□ 1.11
COL28A1Q2UY09 MIR4767-201ENST00000582827 78 ntBASIC22■■□□□ 1.11
COL28A1Q2UY09 AC145676.1-201ENST00000514988 2004 ntBASIC22■■□□□ 1.11
COL28A1Q2UY09 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22■■□□□ 1.11
COL28A1Q2UY09 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL28A1Q2UY09 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22■■□□□ 1.11
COL28A1Q2UY09 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL28A1Q2UY09 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
COL28A1Q2UY09 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.99■■□□□ 1.11
COL28A1Q2UY09 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
COL28A1Q2UY09 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
COL28A1Q2UY09 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL28A1Q2UY09 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.99■■□□□ 1.11
COL28A1Q2UY09 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL28A1Q2UY09 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL28A1Q2UY09 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL28A1Q2UY09 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL28A1Q2UY09 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL28A1Q2UY09 AC034268.1-201ENST00000441047 882 ntBASIC21.98■■□□□ 1.11
COL28A1Q2UY09 SLC47A1P1-202ENST00000449666 945 ntBASIC21.98■■□□□ 1.11
COL28A1Q2UY09 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
COL28A1Q2UY09 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.98■■□□□ 1.11
COL28A1Q2UY09 AC092437.1-201ENST00000624794 1048 ntBASIC21.98■■□□□ 1.11
COL28A1Q2UY09 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL28A1Q2UY09 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
COL28A1Q2UY09 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.98■■□□□ 1.11
COL28A1Q2UY09 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL28A1Q2UY09 AC010501.1-201ENST00000606270 1962 ntBASIC21.98■■□□□ 1.11
COL28A1Q2UY09 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL28A1Q2UY09 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL28A1Q2UY09 DUSP8P4-201ENST00000399538 1761 ntBASIC21.97■■□□□ 1.11
COL28A1Q2UY09 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.97■■□□□ 1.11
COL28A1Q2UY09 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.97■■□□□ 1.11
COL28A1Q2UY09 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.97■■□□□ 1.11
COL28A1Q2UY09 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
COL28A1Q2UY09 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.97■■□□□ 1.11
COL28A1Q2UY09 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL28A1Q2UY09 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL28A1Q2UY09 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
COL28A1Q2UY09 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL28A1Q2UY09 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.95■■□□□ 1.1
COL28A1Q2UY09 AC004911.1-201ENST00000416316 871 ntBASIC21.95■■□□□ 1.1
COL28A1Q2UY09 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL28A1Q2UY09 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
COL28A1Q2UY09 MIR6722-201ENST00000617286 78 ntBASIC21.95■■□□□ 1.1
COL28A1Q2UY09 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL28A1Q2UY09 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 KRT18P5-201ENST00000436075 1291 ntBASIC21.94■■□□□ 1.1
COL28A1Q2UY09 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms