Protein–RNA interactions for Protein: P60228

EIF3E, Eukaryotic translation initiation factor 3 subunit E, humanhuman

Known RBP Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3EP60228 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
EIF3EP60228 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.71■■□□□ 1.39
EIF3EP60228 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
EIF3EP60228 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.39
EIF3EP60228 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.7■■□□□ 1.38
EIF3EP60228 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.7■■□□□ 1.38
EIF3EP60228 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
EIF3EP60228 AC022616.5-201ENST00000518796 181 ntBASIC23.7■■□□□ 1.38
EIF3EP60228 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC23.7■■□□□ 1.38
EIF3EP60228 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
EIF3EP60228 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
EIF3EP60228 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.7■■□□□ 1.38
EIF3EP60228 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
EIF3EP60228 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
EIF3EP60228 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
EIF3EP60228 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
EIF3EP60228 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.69■■□□□ 1.38
EIF3EP60228 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
EIF3EP60228 DUSP8P5-201ENST00000422884 1815 ntBASIC23.69■■□□□ 1.38
EIF3EP60228 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
EIF3EP60228 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
EIF3EP60228 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
EIF3EP60228 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
EIF3EP60228 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
EIF3EP60228 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
EIF3EP60228 AL161729.1-201ENST00000604104 1402 ntBASIC23.68■■□□□ 1.38
EIF3EP60228 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
EIF3EP60228 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
EIF3EP60228 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
EIF3EP60228 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
EIF3EP60228 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
EIF3EP60228 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
EIF3EP60228 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC23.68■■□□□ 1.38
EIF3EP60228 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
EIF3EP60228 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
EIF3EP60228 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
EIF3EP60228 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.68■■□□□ 1.38
EIF3EP60228 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
EIF3EP60228 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.67■■□□□ 1.38
EIF3EP60228 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
EIF3EP60228 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
EIF3EP60228 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
EIF3EP60228 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
EIF3EP60228 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
EIF3EP60228 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
EIF3EP60228 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.66■■□□□ 1.38
EIF3EP60228 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
EIF3EP60228 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
EIF3EP60228 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.66■■□□□ 1.38
EIF3EP60228 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
EIF3EP60228 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.65■■□□□ 1.38
EIF3EP60228 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.65■■□□□ 1.38
EIF3EP60228 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
EIF3EP60228 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
EIF3EP60228 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.65■■□□□ 1.38
EIF3EP60228 IDNK-201ENST00000376417 511 ntTSL 5 BASIC23.65■■□□□ 1.38
EIF3EP60228 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
EIF3EP60228 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.65■■□□□ 1.38
EIF3EP60228 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.65■■□□□ 1.38
EIF3EP60228 AL022069.1-201ENST00000568025 1636 ntBASIC23.65■■□□□ 1.38
EIF3EP60228 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
EIF3EP60228 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
EIF3EP60228 TSPY13P-201ENST00000338964 914 ntBASIC23.64■■□□□ 1.37
EIF3EP60228 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
EIF3EP60228 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.64■■□□□ 1.37
EIF3EP60228 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
EIF3EP60228 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
EIF3EP60228 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.64■■□□□ 1.37
EIF3EP60228 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
EIF3EP60228 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
EIF3EP60228 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
EIF3EP60228 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
EIF3EP60228 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
EIF3EP60228 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
EIF3EP60228 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.63■■□□□ 1.37
EIF3EP60228 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.63■■□□□ 1.37
EIF3EP60228 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.63■■□□□ 1.37
EIF3EP60228 PVT1_1.1-201ENST00000615125 194 ntBASIC23.63■■□□□ 1.37
EIF3EP60228 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
EIF3EP60228 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
EIF3EP60228 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.62■■□□□ 1.37
EIF3EP60228 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
EIF3EP60228 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
EIF3EP60228 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.62■■□□□ 1.37
EIF3EP60228 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
EIF3EP60228 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
EIF3EP60228 AC074183.2-201ENST00000623112 922 ntBASIC23.62■■□□□ 1.37
EIF3EP60228 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
EIF3EP60228 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
EIF3EP60228 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
EIF3EP60228 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.62■■□□□ 1.37
EIF3EP60228 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.62■■□□□ 1.37
EIF3EP60228 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.61■■□□□ 1.37
EIF3EP60228 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
EIF3EP60228 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC23.61■■□□□ 1.37
EIF3EP60228 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC23.61■■□□□ 1.37
EIF3EP60228 AC120024.1-201ENST00000562672 995 ntBASIC23.61■■□□□ 1.37
EIF3EP60228 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
EIF3EP60228 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
EIF3EP60228 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms