Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CXCL12P48061 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.18■■□□□ 1.3
CXCL12P48061 AC090192.1-201ENST00000517740 490 ntBASIC23.18■■□□□ 1.3
CXCL12P48061 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CXCL12P48061 RARRES2P11-201ENST00000635158 484 ntBASIC23.18■■□□□ 1.3
CXCL12P48061 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CXCL12P48061 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
CXCL12P48061 ERN1-208ENST00000606895 2068 ntBASIC23.18■■□□□ 1.3
CXCL12P48061 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.17■■□□□ 1.3
CXCL12P48061 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.17■■□□□ 1.3
CXCL12P48061 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.17■■□□□ 1.3
CXCL12P48061 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.17■■□□□ 1.3
CXCL12P48061 AC233992.3-201ENST00000607491 485 ntBASIC23.17■■□□□ 1.3
CXCL12P48061 MPST-208ENST00000628507 698 ntTSL 5 BASIC23.17■■□□□ 1.3
CXCL12P48061 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.17■■□□□ 1.3
CXCL12P48061 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
CXCL12P48061 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CXCL12P48061 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CXCL12P48061 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CXCL12P48061 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CXCL12P48061 AC034268.1-201ENST00000441047 882 ntBASIC23.16■■□□□ 1.3
CXCL12P48061 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CXCL12P48061 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC23.16■■□□□ 1.3
CXCL12P48061 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CXCL12P48061 AC131274.2-201ENST00000580697 1507 ntBASIC23.16■■□□□ 1.3
CXCL12P48061 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CXCL12P48061 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
CXCL12P48061 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.15■■□□□ 1.3
CXCL12P48061 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CXCL12P48061 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CXCL12P48061 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.15■■□□□ 1.3
CXCL12P48061 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.15■■□□□ 1.3
CXCL12P48061 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
CXCL12P48061 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CXCL12P48061 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.14■■□□□ 1.29
CXCL12P48061 BX842568.3-201ENST00000418104 571 ntBASIC23.14■■□□□ 1.29
CXCL12P48061 GRAMD4P2-201ENST00000423297 1097 ntBASIC23.14■■□□□ 1.29
CXCL12P48061 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC23.14■■□□□ 1.29
CXCL12P48061 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CXCL12P48061 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CXCL12P48061 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.14■■□□□ 1.29
CXCL12P48061 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CXCL12P48061 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
CXCL12P48061 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.13■■□□□ 1.29
CXCL12P48061 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CXCL12P48061 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CXCL12P48061 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.13■■□□□ 1.29
CXCL12P48061 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC23.13■■□□□ 1.29
CXCL12P48061 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CXCL12P48061 C17orf82-201ENST00000623772 1530 ntBASIC23.13■■□□□ 1.29
CXCL12P48061 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
CXCL12P48061 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CXCL12P48061 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CXCL12P48061 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CXCL12P48061 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC23.12■■□□□ 1.29
CXCL12P48061 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
CXCL12P48061 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.12■■□□□ 1.29
CXCL12P48061 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.12■■□□□ 1.29
CXCL12P48061 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.12■■□□□ 1.29
CXCL12P48061 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CXCL12P48061 AC022517.1-201ENST00000592429 346 ntBASIC23.12■■□□□ 1.29
CXCL12P48061 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC23.12■■□□□ 1.29
CXCL12P48061 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CXCL12P48061 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CXCL12P48061 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CXCL12P48061 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CXCL12P48061 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CXCL12P48061 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CXCL12P48061 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC23.11■■□□□ 1.29
CXCL12P48061 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.11■■□□□ 1.29
CXCL12P48061 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC23.11■■□□□ 1.29
CXCL12P48061 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CXCL12P48061 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CXCL12P48061 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
CXCL12P48061 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.11■■□□□ 1.29
CXCL12P48061 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CXCL12P48061 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.1■■□□□ 1.29
CXCL12P48061 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CXCL12P48061 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
CXCL12P48061 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.1■■□□□ 1.29
CXCL12P48061 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.1■■□□□ 1.29
CXCL12P48061 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC23.1■■□□□ 1.29
CXCL12P48061 IKBKGP1-201ENST00000612193 1073 ntBASIC23.1■■□□□ 1.29
CXCL12P48061 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
CXCL12P48061 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.1■■□□□ 1.29
CXCL12P48061 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CXCL12P48061 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CXCL12P48061 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CXCL12P48061 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.09■■□□□ 1.29
CXCL12P48061 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CXCL12P48061 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CXCL12P48061 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CXCL12P48061 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CXCL12P48061 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.09■■□□□ 1.29
CXCL12P48061 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CXCL12P48061 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC23.09■■□□□ 1.29
CXCL12P48061 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.09■■□□□ 1.29
CXCL12P48061 AL137784.2-201ENST00000607332 1000 ntBASIC23.09■■□□□ 1.29
CXCL12P48061 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.09■■□□□ 1.29
CXCL12P48061 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms