Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC17.45■□□□□ 0.38
HLA-DMBP28068 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DMBP28068 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC17.44■□□□□ 0.38
HLA-DMBP28068 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HLA-DMBP28068 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DMBP28068 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC17.44■□□□□ 0.38
HLA-DMBP28068 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DMBP28068 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DMBP28068 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC17.44■□□□□ 0.38
HLA-DMBP28068 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC17.44■□□□□ 0.38
HLA-DMBP28068 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC17.44■□□□□ 0.38
HLA-DMBP28068 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DMBP28068 MIR6765-201ENST00000614092 87 ntBASIC17.44■□□□□ 0.38
HLA-DMBP28068 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DMBP28068 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DMBP28068 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DMBP28068 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DMBP28068 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DMBP28068 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
HLA-DMBP28068 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DMBP28068 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DMBP28068 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DMBP28068 AC087393.1-201ENST00000582896 145 ntBASIC17.43■□□□□ 0.38
HLA-DMBP28068 AC090877.2-201ENST00000558441 1738 ntBASIC17.43■□□□□ 0.38
HLA-DMBP28068 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
HLA-DMBP28068 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DMBP28068 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DMBP28068 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DMBP28068 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DMBP28068 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HLA-DMBP28068 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DMBP28068 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DMBP28068 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DMBP28068 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DMBP28068 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC17.42■□□□□ 0.38
HLA-DMBP28068 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HLA-DMBP28068 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DMBP28068 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
HLA-DMBP28068 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DMBP28068 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DMBP28068 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
HLA-DMBP28068 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HLA-DMBP28068 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DMBP28068 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DMBP28068 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC17.41■□□□□ 0.38
HLA-DMBP28068 IDNK-203ENST00000405990 629 ntTSL 2 BASIC17.41■□□□□ 0.38
HLA-DMBP28068 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC17.41■□□□□ 0.38
HLA-DMBP28068 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DMBP28068 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DMBP28068 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DMBP28068 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DMBP28068 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DMBP28068 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DMBP28068 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC17.41■□□□□ 0.38
HLA-DMBP28068 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DMBP28068 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DMBP28068 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
HLA-DMBP28068 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC17.4■□□□□ 0.38
HLA-DMBP28068 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DMBP28068 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
HLA-DMBP28068 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DMBP28068 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DMBP28068 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DMBP28068 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DMBP28068 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.4■□□□□ 0.38
HLA-DMBP28068 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
HLA-DMBP28068 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DMBP28068 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DMBP28068 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DMBP28068 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC17.4■□□□□ 0.38
HLA-DMBP28068 NFE2L3P1-201ENST00000588207 1959 ntBASIC17.4■□□□□ 0.38
HLA-DMBP28068 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DMBP28068 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DMBP28068 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HLA-DMBP28068 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DMBP28068 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HLA-DMBP28068 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DMBP28068 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HLA-DMBP28068 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.39■□□□□ 0.37
HLA-DMBP28068 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DMBP28068 AL592295.1-201ENST00000400984 884 ntBASIC17.39■□□□□ 0.37
HLA-DMBP28068 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC17.39■□□□□ 0.37
HLA-DMBP28068 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DMBP28068 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DMBP28068 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC17.39■□□□□ 0.37
HLA-DMBP28068 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.39■□□□□ 0.37
HLA-DMBP28068 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
HLA-DMBP28068 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DMBP28068 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DMBP28068 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DMBP28068 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DMBP28068 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DMBP28068 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DMBP28068 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC17.38■□□□□ 0.37
HLA-DMBP28068 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC17.38■□□□□ 0.37
HLA-DMBP28068 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC17.38■□□□□ 0.37
HLA-DMBP28068 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HLA-DMBP28068 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DMBP28068 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DMBP28068 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms