Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USF1P22415 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
USF1P22415 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.41■□□□□ 0.7
USF1P22415 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USF1P22415 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USF1P22415 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.4■□□□□ 0.7
USF1P22415 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.4■□□□□ 0.7
USF1P22415 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USF1P22415 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USF1P22415 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
USF1P22415 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.4■□□□□ 0.7
USF1P22415 AC106739.1-201ENST00000617035 715 ntBASIC19.4■□□□□ 0.7
USF1P22415 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USF1P22415 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USF1P22415 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
USF1P22415 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USF1P22415 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USF1P22415 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.39■□□□□ 0.69
USF1P22415 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USF1P22415 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USF1P22415 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USF1P22415 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USF1P22415 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USF1P22415 SRD5A1P1-201ENST00000442297 786 ntBASIC19.38■□□□□ 0.69
USF1P22415 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
USF1P22415 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.38■□□□□ 0.69
USF1P22415 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.38■□□□□ 0.69
USF1P22415 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USF1P22415 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USF1P22415 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USF1P22415 AC142381.2-201ENST00000566120 298 ntBASIC19.37■□□□□ 0.69
USF1P22415 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.37■□□□□ 0.69
USF1P22415 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
USF1P22415 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
USF1P22415 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.36■□□□□ 0.69
USF1P22415 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
USF1P22415 UNC93B3-201ENST00000308076 687 ntBASIC19.36■□□□□ 0.69
USF1P22415 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.36■□□□□ 0.69
USF1P22415 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USF1P22415 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.36■□□□□ 0.69
USF1P22415 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.36■□□□□ 0.69
USF1P22415 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.36■□□□□ 0.69
USF1P22415 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USF1P22415 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
USF1P22415 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USF1P22415 AC096887.2-201ENST00000623443 1957 ntBASIC19.35■□□□□ 0.69
USF1P22415 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.35■□□□□ 0.69
USF1P22415 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USF1P22415 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USF1P22415 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USF1P22415 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
USF1P22415 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USF1P22415 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.35■□□□□ 0.69
USF1P22415 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.35■□□□□ 0.69
USF1P22415 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USF1P22415 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.35■□□□□ 0.69
USF1P22415 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USF1P22415 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.34■□□□□ 0.69
USF1P22415 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USF1P22415 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.34■□□□□ 0.69
USF1P22415 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USF1P22415 AL136162.1-201ENST00000607711 1078 ntBASIC19.34■□□□□ 0.69
USF1P22415 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.34■□□□□ 0.69
USF1P22415 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USF1P22415 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
USF1P22415 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USF1P22415 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
USF1P22415 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.69
USF1P22415 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USF1P22415 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USF1P22415 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
USF1P22415 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USF1P22415 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USF1P22415 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USF1P22415 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.33■□□□□ 0.68
USF1P22415 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
USF1P22415 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
USF1P22415 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USF1P22415 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
USF1P22415 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USF1P22415 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.33■□□□□ 0.68
USF1P22415 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USF1P22415 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USF1P22415 AC135279.3-201ENST00000610945 1311 ntBASIC19.32■□□□□ 0.68
USF1P22415 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USF1P22415 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.32■□□□□ 0.68
USF1P22415 AC004448.1-201ENST00000458332 883 ntBASIC19.32■□□□□ 0.68
USF1P22415 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.32■□□□□ 0.68
USF1P22415 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.32■□□□□ 0.68
USF1P22415 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.32■□□□□ 0.68
USF1P22415 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
USF1P22415 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
USF1P22415 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USF1P22415 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USF1P22415 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
USF1P22415 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
USF1P22415 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
USF1P22415 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
USF1P22415 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
USF1P22415 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms