Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CD74P04233 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.35■□□□□ 0.69
CD74P04233 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CD74P04233 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CD74P04233 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.35■□□□□ 0.69
CD74P04233 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CD74P04233 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CD74P04233 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.35■□□□□ 0.69
CD74P04233 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CD74P04233 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CD74P04233 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CD74P04233 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CD74P04233 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.34■□□□□ 0.69
CD74P04233 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CD74P04233 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CD74P04233 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.34■□□□□ 0.69
CD74P04233 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC19.34■□□□□ 0.69
CD74P04233 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CD74P04233 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CD74P04233 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CD74P04233 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.34■□□□□ 0.69
CD74P04233 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CD74P04233 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CD74P04233 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC19.33■□□□□ 0.69
CD74P04233 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CD74P04233 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CD74P04233 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CD74P04233 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CD74P04233 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CD74P04233 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CD74P04233 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.33■□□□□ 0.68
CD74P04233 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
CD74P04233 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CD74P04233 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CD74P04233 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.32■□□□□ 0.68
CD74P04233 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CD74P04233 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CD74P04233 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CD74P04233 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CD74P04233 AGPS-202ENST00000409888 815 ntTSL 4 BASIC19.32■□□□□ 0.68
CD74P04233 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.32■□□□□ 0.68
CD74P04233 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CD74P04233 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.32■□□□□ 0.68
CD74P04233 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.32■□□□□ 0.68
CD74P04233 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CD74P04233 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CD74P04233 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CD74P04233 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CD74P04233 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CD74P04233 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.31■□□□□ 0.68
CD74P04233 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CD74P04233 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CD74P04233 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
CD74P04233 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CD74P04233 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CD74P04233 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CD74P04233 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CD74P04233 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CD74P04233 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CD74P04233 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.31■□□□□ 0.68
CD74P04233 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
CD74P04233 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CD74P04233 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CD74P04233 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CD74P04233 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CD74P04233 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CD74P04233 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CD74P04233 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.3■□□□□ 0.68
CD74P04233 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CD74P04233 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CD74P04233 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CD74P04233 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CD74P04233 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.3■□□□□ 0.68
CD74P04233 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CD74P04233 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CD74P04233 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CD74P04233 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CD74P04233 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CD74P04233 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CD74P04233 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.29■□□□□ 0.68
CD74P04233 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
CD74P04233 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CD74P04233 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.29■□□□□ 0.68
CD74P04233 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC19.29■□□□□ 0.68
CD74P04233 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.29■□□□□ 0.68
CD74P04233 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CD74P04233 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CD74P04233 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.29■□□□□ 0.68
CD74P04233 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.29■□□□□ 0.68
CD74P04233 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CD74P04233 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CD74P04233 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CD74P04233 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CD74P04233 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.28■□□□□ 0.68
CD74P04233 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.28■□□□□ 0.68
CD74P04233 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
CD74P04233 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CD74P04233 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CD74P04233 SMPD5-203ENST00000639008 1464 ntBASIC19.28■□□□□ 0.68
CD74P04233 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms