Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CPSF4O95639 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CPSF4O95639 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CPSF4O95639 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
CPSF4O95639 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
CPSF4O95639 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CPSF4O95639 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.8■■□□□ 1.08
CPSF4O95639 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.8■■□□□ 1.08
CPSF4O95639 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CPSF4O95639 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
CPSF4O95639 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.8■■□□□ 1.08
CPSF4O95639 AC129492.7-201ENST00000622992 756 ntBASIC21.8■■□□□ 1.08
CPSF4O95639 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CPSF4O95639 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CPSF4O95639 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CPSF4O95639 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CPSF4O95639 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CPSF4O95639 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CPSF4O95639 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.79■■□□□ 1.08
CPSF4O95639 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CPSF4O95639 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.79■■□□□ 1.08
CPSF4O95639 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.79■■□□□ 1.08
CPSF4O95639 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CPSF4O95639 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CPSF4O95639 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CPSF4O95639 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.78■■□□□ 1.08
CPSF4O95639 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.78■■□□□ 1.08
CPSF4O95639 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.78■■□□□ 1.08
CPSF4O95639 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.78■■□□□ 1.08
CPSF4O95639 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CPSF4O95639 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CPSF4O95639 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CPSF4O95639 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CPSF4O95639 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CPSF4O95639 AC068473.5-201ENST00000616428 2072 ntBASIC21.77■■□□□ 1.08
CPSF4O95639 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.77■■□□□ 1.08
CPSF4O95639 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.77■■□□□ 1.08
CPSF4O95639 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CPSF4O95639 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CPSF4O95639 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CPSF4O95639 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CPSF4O95639 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CPSF4O95639 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.75■■□□□ 1.07
CPSF4O95639 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4O95639 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.75■■□□□ 1.07
CPSF4O95639 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4O95639 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4O95639 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4O95639 KRT18P60-201ENST00000312876 1297 ntBASIC21.75■■□□□ 1.07
CPSF4O95639 LONRF2P2-201ENST00000439212 571 ntBASIC21.75■■□□□ 1.07
CPSF4O95639 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4O95639 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.75■■□□□ 1.07
CPSF4O95639 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4O95639 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4O95639 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4O95639 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4O95639 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4O95639 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4O95639 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.74■■□□□ 1.07
CPSF4O95639 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4O95639 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4O95639 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.74■■□□□ 1.07
CPSF4O95639 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4O95639 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
CPSF4O95639 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CPSF4O95639 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.73■■□□□ 1.07
CPSF4O95639 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CPSF4O95639 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CPSF4O95639 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CPSF4O95639 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.73■■□□□ 1.07
CPSF4O95639 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CPSF4O95639 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CPSF4O95639 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CPSF4O95639 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CPSF4O95639 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CPSF4O95639 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CPSF4O95639 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4O95639 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.72■■□□□ 1.07
CPSF4O95639 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CPSF4O95639 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4O95639 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CPSF4O95639 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4O95639 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4O95639 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.72■■□□□ 1.07
CPSF4O95639 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CPSF4O95639 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4O95639 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CPSF4O95639 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.72■■□□□ 1.07
CPSF4O95639 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4O95639 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CPSF4O95639 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4O95639 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPSF4O95639 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.71■■□□□ 1.07
CPSF4O95639 AC012676.1-201ENST00000574705 1949 ntBASIC21.71■■□□□ 1.07
CPSF4O95639 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPSF4O95639 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.71■■□□□ 1.07
CPSF4O95639 DUX4L18-201ENST00000553347 1267 ntBASIC21.71■■□□□ 1.07
CPSF4O95639 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
CPSF4O95639 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPSF4O95639 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms