Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1BO60663 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.18■□□□□ 0.82
LMX1BO60663 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1BO60663 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
LMX1BO60663 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
LMX1BO60663 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1BO60663 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1BO60663 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1BO60663 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1BO60663 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.18■□□□□ 0.82
LMX1BO60663 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1BO60663 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LMX1BO60663 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1BO60663 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1BO60663 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1BO60663 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1BO60663 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.17■□□□□ 0.82
LMX1BO60663 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
LMX1BO60663 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1BO60663 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1BO60663 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1BO60663 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1BO60663 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.17■□□□□ 0.82
LMX1BO60663 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1BO60663 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1BO60663 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1BO60663 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1BO60663 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.16■□□□□ 0.82
LMX1BO60663 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.16■□□□□ 0.82
LMX1BO60663 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
LMX1BO60663 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.16■□□□□ 0.82
LMX1BO60663 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1BO60663 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1BO60663 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1BO60663 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
LMX1BO60663 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1BO60663 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.15■□□□□ 0.82
LMX1BO60663 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1BO60663 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.14■□□□□ 0.82
LMX1BO60663 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
LMX1BO60663 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LMX1BO60663 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LMX1BO60663 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LMX1BO60663 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LMX1BO60663 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
LMX1BO60663 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.14■□□□□ 0.81
LMX1BO60663 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.14■□□□□ 0.81
LMX1BO60663 AL356441.2-201ENST00000443009 864 ntBASIC20.14■□□□□ 0.81
LMX1BO60663 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LMX1BO60663 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
LMX1BO60663 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.14■□□□□ 0.81
LMX1BO60663 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.14■□□□□ 0.81
LMX1BO60663 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.13■□□□□ 0.81
LMX1BO60663 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LMX1BO60663 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
LMX1BO60663 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LMX1BO60663 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.13■□□□□ 0.81
LMX1BO60663 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LMX1BO60663 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.13■□□□□ 0.81
LMX1BO60663 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
LMX1BO60663 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
LMX1BO60663 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.12■□□□□ 0.81
LMX1BO60663 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1BO60663 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1BO60663 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1BO60663 AC068473.5-201ENST00000616428 2072 ntBASIC20.12■□□□□ 0.81
LMX1BO60663 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.12■□□□□ 0.81
LMX1BO60663 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1BO60663 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
LMX1BO60663 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.12■□□□□ 0.81
LMX1BO60663 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1BO60663 KRT18P10-201ENST00000388836 1287 ntBASIC20.12■□□□□ 0.81
LMX1BO60663 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.12■□□□□ 0.81
LMX1BO60663 AC019171.1-201ENST00000601251 1056 ntBASIC20.12■□□□□ 0.81
LMX1BO60663 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1BO60663 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LMX1BO60663 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1BO60663 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1BO60663 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.11■□□□□ 0.81
LMX1BO60663 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1BO60663 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
LMX1BO60663 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1BO60663 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LMX1BO60663 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.11■□□□□ 0.81
LMX1BO60663 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1BO60663 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.1■□□□□ 0.81
LMX1BO60663 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1BO60663 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
LMX1BO60663 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.1■□□□□ 0.81
LMX1BO60663 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1BO60663 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
LMX1BO60663 AC239859.2-201ENST00000444165 318 ntBASIC20.1■□□□□ 0.81
LMX1BO60663 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
LMX1BO60663 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.1■□□□□ 0.81
LMX1BO60663 DUSP8P5-201ENST00000422884 1815 ntBASIC20.1■□□□□ 0.81
LMX1BO60663 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1BO60663 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1BO60663 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1BO60663 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1BO60663 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms