Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.81■■□□□ 1.56
LRRC53A6NM62 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
LRRC53A6NM62 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
LRRC53A6NM62 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
LRRC53A6NM62 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
LRRC53A6NM62 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
LRRC53A6NM62 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
LRRC53A6NM62 KRT18P60-201ENST00000312876 1297 ntBASIC24.8■■□□□ 1.56
LRRC53A6NM62 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
LRRC53A6NM62 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
LRRC53A6NM62 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC24.8■■□□□ 1.56
LRRC53A6NM62 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
LRRC53A6NM62 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
LRRC53A6NM62 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
LRRC53A6NM62 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
LRRC53A6NM62 CD37-213ENST00000598095 1598 ntTSL 2 BASIC24.8■■□□□ 1.56
LRRC53A6NM62 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC24.79■■□□□ 1.56
LRRC53A6NM62 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
LRRC53A6NM62 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
LRRC53A6NM62 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC24.79■■□□□ 1.56
LRRC53A6NM62 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
LRRC53A6NM62 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
LRRC53A6NM62 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
LRRC53A6NM62 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
LRRC53A6NM62 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
LRRC53A6NM62 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
LRRC53A6NM62 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
LRRC53A6NM62 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC24.78■■□□□ 1.56
LRRC53A6NM62 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC24.78■■□□□ 1.56
LRRC53A6NM62 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
LRRC53A6NM62 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
LRRC53A6NM62 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
LRRC53A6NM62 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC24.77■■□□□ 1.56
LRRC53A6NM62 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
LRRC53A6NM62 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
LRRC53A6NM62 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC24.77■■□□□ 1.56
LRRC53A6NM62 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
LRRC53A6NM62 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
LRRC53A6NM62 EI24-213ENST00000618552 1747 ntTSL 5 BASIC24.77■■□□□ 1.56
LRRC53A6NM62 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC24.77■■□□□ 1.56
LRRC53A6NM62 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
LRRC53A6NM62 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
LRRC53A6NM62 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC24.76■■□□□ 1.55
LRRC53A6NM62 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
LRRC53A6NM62 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC24.76■■□□□ 1.55
LRRC53A6NM62 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
LRRC53A6NM62 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
LRRC53A6NM62 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
LRRC53A6NM62 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC24.76■■□□□ 1.55
LRRC53A6NM62 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.76■■□□□ 1.55
LRRC53A6NM62 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
LRRC53A6NM62 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
LRRC53A6NM62 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC24.75■■□□□ 1.55
LRRC53A6NM62 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
LRRC53A6NM62 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC24.75■■□□□ 1.55
LRRC53A6NM62 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
LRRC53A6NM62 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
LRRC53A6NM62 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
LRRC53A6NM62 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
LRRC53A6NM62 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
LRRC53A6NM62 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
LRRC53A6NM62 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
LRRC53A6NM62 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
LRRC53A6NM62 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
LRRC53A6NM62 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC24.74■■□□□ 1.55
LRRC53A6NM62 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
LRRC53A6NM62 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC24.74■■□□□ 1.55
LRRC53A6NM62 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
LRRC53A6NM62 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC24.74■■□□□ 1.55
LRRC53A6NM62 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC24.73■■□□□ 1.55
LRRC53A6NM62 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
LRRC53A6NM62 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
LRRC53A6NM62 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC24.73■■□□□ 1.55
LRRC53A6NM62 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
LRRC53A6NM62 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC24.73■■□□□ 1.55
LRRC53A6NM62 AL161729.1-201ENST00000604104 1402 ntBASIC24.73■■□□□ 1.55
LRRC53A6NM62 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
LRRC53A6NM62 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC24.73■■□□□ 1.55
LRRC53A6NM62 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
LRRC53A6NM62 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
LRRC53A6NM62 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.72■■□□□ 1.55
LRRC53A6NM62 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC24.72■■□□□ 1.55
LRRC53A6NM62 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
LRRC53A6NM62 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
LRRC53A6NM62 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
LRRC53A6NM62 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC24.72■■□□□ 1.55
LRRC53A6NM62 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
LRRC53A6NM62 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
LRRC53A6NM62 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC24.72■■□□□ 1.55
LRRC53A6NM62 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC24.72■■□□□ 1.55
LRRC53A6NM62 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
LRRC53A6NM62 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC24.71■■□□□ 1.55
LRRC53A6NM62 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
LRRC53A6NM62 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC24.71■■□□□ 1.55
LRRC53A6NM62 ANOS2P-203ENST00000472227 1816 ntBASIC24.71■■□□□ 1.55
LRRC53A6NM62 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
LRRC53A6NM62 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
LRRC53A6NM62 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
LRRC53A6NM62 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
LRRC53A6NM62 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms