Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV39A0A0B4J263 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV39A0A0B4J263 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.21■□□□□ 0.67
TRAV39A0A0B4J263 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV39A0A0B4J263 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV39A0A0B4J263 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV39A0A0B4J263 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV39A0A0B4J263 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 PVT1_1.1-201ENST00000615125 194 ntBASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV39A0A0B4J263 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAV39A0A0B4J263 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAV39A0A0B4J263 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV39A0A0B4J263 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV39A0A0B4J263 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV39A0A0B4J263 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV39A0A0B4J263 AC010980.1-201ENST00000587192 1142 ntBASIC19.19■□□□□ 0.66
TRAV39A0A0B4J263 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAV39A0A0B4J263 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAV39A0A0B4J263 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV39A0A0B4J263 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
TRAV39A0A0B4J263 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV39A0A0B4J263 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV39A0A0B4J263 AL033527.3-201ENST00000566366 1196 ntBASIC19.18■□□□□ 0.66
TRAV39A0A0B4J263 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV39A0A0B4J263 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV39A0A0B4J263 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV39A0A0B4J263 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 TSPY13P-201ENST00000338964 914 ntBASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 AC133561.1-201ENST00000568600 2415 ntBASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV39A0A0B4J263 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TRAV39A0A0B4J263 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV39A0A0B4J263 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
TRAV39A0A0B4J263 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV39A0A0B4J263 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV39A0A0B4J263 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV39A0A0B4J263 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV39A0A0B4J263 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 MTX2-204ENST00000443241 799 ntTSL 3 BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV39A0A0B4J263 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV39A0A0B4J263 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
TRAV39A0A0B4J263 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV39A0A0B4J263 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV39A0A0B4J263 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV39A0A0B4J263 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV39A0A0B4J263 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV39A0A0B4J263 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV39A0A0B4J263 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV39A0A0B4J263 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV39A0A0B4J263 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.13■□□□□ 0.65
TRAV39A0A0B4J263 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms