Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.03■□□□□ 0.8
TRAV1-2A0A0B4J238 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV1-2A0A0B4J238 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV1-2A0A0B4J238 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV1-2A0A0B4J238 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV1-2A0A0B4J238 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.02■□□□□ 0.8
TRAV1-2A0A0B4J238 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
TRAV1-2A0A0B4J238 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV1-2A0A0B4J238 ZNRF2P2-203ENST00000454624 420 ntBASIC20.02■□□□□ 0.8
TRAV1-2A0A0B4J238 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV1-2A0A0B4J238 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV1-2A0A0B4J238 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 AC060814.1-201ENST00000554326 538 ntBASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 GUSBP5-202ENST00000510805 1989 ntBASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.01■□□□□ 0.79
TRAV1-2A0A0B4J238 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 REST-210ENST00000638187 1334 ntTSL 5 BASIC20■□□□□ 0.79
TRAV1-2A0A0B4J238 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 ECEL1P1-201ENST00000373592 1742 ntBASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 RP9P-202ENST00000450133 1212 ntBASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 AC137767.1-201ENST00000602918 1920 ntBASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV1-2A0A0B4J238 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV1-2A0A0B4J238 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV1-2A0A0B4J238 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV1-2A0A0B4J238 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.98■□□□□ 0.79
TRAV1-2A0A0B4J238 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV1-2A0A0B4J238 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.98■□□□□ 0.79
TRAV1-2A0A0B4J238 AL161729.1-201ENST00000604104 1402 ntBASIC19.98■□□□□ 0.79
TRAV1-2A0A0B4J238 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV1-2A0A0B4J238 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV1-2A0A0B4J238 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV1-2A0A0B4J238 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV1-2A0A0B4J238 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
TRAV1-2A0A0B4J238 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-2A0A0B4J238 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-2A0A0B4J238 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-2A0A0B4J238 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.97■□□□□ 0.79
TRAV1-2A0A0B4J238 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-2A0A0B4J238 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-2A0A0B4J238 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-2A0A0B4J238 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-2A0A0B4J238 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-2A0A0B4J238 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-2A0A0B4J238 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-2A0A0B4J238 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV1-2A0A0B4J238 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.96■□□□□ 0.79
TRAV1-2A0A0B4J238 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV1-2A0A0B4J238 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV1-2A0A0B4J238 AC092296.2-201ENST00000589470 999 ntBASIC19.96■□□□□ 0.79
TRAV1-2A0A0B4J238 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV1-2A0A0B4J238 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.96■□□□□ 0.79
TRAV1-2A0A0B4J238 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV1-2A0A0B4J238 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.96■□□□□ 0.79
TRAV1-2A0A0B4J238 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
TRAV1-2A0A0B4J238 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.95■□□□□ 0.78
TRAV1-2A0A0B4J238 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.95■□□□□ 0.78
TRAV1-2A0A0B4J238 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.95■□□□□ 0.78
TRAV1-2A0A0B4J238 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.95■□□□□ 0.78
TRAV1-2A0A0B4J238 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV1-2A0A0B4J238 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV1-2A0A0B4J238 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV1-2A0A0B4J238 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV1-2A0A0B4J238 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV1-2A0A0B4J238 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms