Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 EEF1DP5-201ENST00000431410 772 ntBASIC12.87□□□□□ -0.35
COL12A1Q99715 VENTXP4-201ENST00000449029 958 ntBASIC12.87□□□□□ -0.35
COL12A1Q99715 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC12.87□□□□□ -0.35
COL12A1Q99715 PTGER4P3-201ENST00000458150 252 ntBASIC12.87□□□□□ -0.35
COL12A1Q99715 AC092896.1-201ENST00000465850 380 ntBASIC12.87□□□□□ -0.35
COL12A1Q99715 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC12.87□□□□□ -0.35
COL12A1Q99715 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
COL12A1Q99715 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
COL12A1Q99715 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC12.87□□□□□ -0.35
COL12A1Q99715 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC12.87□□□□□ -0.35
COL12A1Q99715 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.87□□□□□ -0.35
COL12A1Q99715 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC12.87□□□□□ -0.35
COL12A1Q99715 SCARNA12-201ENST00000459155 270 ntBASIC12.87□□□□□ -0.35
COL12A1Q99715 AC226150.1-201ENST00000544259 466 ntBASIC12.87□□□□□ -0.35
COL12A1Q99715 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
COL12A1Q99715 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC12.87□□□□□ -0.35
COL12A1Q99715 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC12.87□□□□□ -0.35
COL12A1Q99715 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.87□□□□□ -0.35
COL12A1Q99715 FUK-207ENST00000571514 3054 ntTSL 2 BASIC12.87□□□□□ -0.35
COL12A1Q99715 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC12.87□□□□□ -0.35
COL12A1Q99715 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC12.87□□□□□ -0.35
COL12A1Q99715 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 HLF-202ENST00000430986 1385 ntTSL 2 BASIC12.87□□□□□ -0.35
COL12A1Q99715 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
COL12A1Q99715 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC12.87□□□□□ -0.35
COL12A1Q99715 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC12.87□□□□□ -0.35
COL12A1Q99715 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
COL12A1Q99715 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC12.87□□□□□ -0.35
COL12A1Q99715 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
COL12A1Q99715 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
COL12A1Q99715 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC12.87□□□□□ -0.35
COL12A1Q99715 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC12.87□□□□□ -0.35
COL12A1Q99715 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC12.87□□□□□ -0.35
COL12A1Q99715 AC008825.2-201ENST00000603374 718 ntBASIC12.87□□□□□ -0.35
COL12A1Q99715 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL12A1Q99715 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC12.86□□□□□ -0.35
COL12A1Q99715 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC12.86□□□□□ -0.35
COL12A1Q99715 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
COL12A1Q99715 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC12.86□□□□□ -0.35
COL12A1Q99715 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC12.86□□□□□ -0.35
COL12A1Q99715 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 AL513523.2-202ENST00000427283 2040 ntBASIC12.86□□□□□ -0.35
COL12A1Q99715 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC12.86□□□□□ -0.35
COL12A1Q99715 NME6-208ENST00000435684 599 ntTSL 2 BASIC12.86□□□□□ -0.35
COL12A1Q99715 KNOP1P1-201ENST00000542108 989 ntBASIC12.86□□□□□ -0.35
COL12A1Q99715 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC12.86□□□□□ -0.35
COL12A1Q99715 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
COL12A1Q99715 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
COL12A1Q99715 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC12.86□□□□□ -0.35
COL12A1Q99715 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.86□□□□□ -0.35
COL12A1Q99715 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.86□□□□□ -0.35
COL12A1Q99715 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.86□□□□□ -0.35
COL12A1Q99715 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
COL12A1Q99715 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
COL12A1Q99715 AC108734.2-201ENST00000420887 1069 ntBASIC12.86□□□□□ -0.35
COL12A1Q99715 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC12.86□□□□□ -0.35
COL12A1Q99715 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
COL12A1Q99715 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC12.86□□□□□ -0.35
COL12A1Q99715 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC12.86□□□□□ -0.35
COL12A1Q99715 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 177.7 ms